MetaComp1.1.2 package

EDGE Taxonomy Assignments Visualization

load_edge_assignment

Efficiently loads an EDGE-produced taxonomic assignment from a file. A...

load_edge_assignments

Efficiently loads a BWA (or other EDGE-like taxonomic assignment) tabl...

merge_edge_assignments

Merges two or more EDGE-like taxonomical assignments. The input data f...

merge_edge_counts

Merges two or more EDGE-like taxonomical assignments. The input data f...

plot_edge_assignment

Generates a single column ggplot for a taxonomic assignment table and ...

plot_merged_assignment

Generates a single column ggplot for a taxonomic assignment table.

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Implements routines for metagenome sample taxonomy assignments collection, aggregation, and visualization. Accepts the EDGE-formatted output from GOTTCHA/GOTTCHA2, BWA, Kraken, MetaPhlAn, DIAMOND, and Pangia. Produces SVG and PDF heatmap-like plots comparing taxa abundances across projects.

  • Maintainer: Pavel Senin
  • License: GPL-2
  • Last published: 2018-06-18

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