Comparison of Phylogenetic Trees Using Quartet and Split Measures
List all quartets
Compare quartet states by explicit enumeration
Compare one tree's quartets against others'
Compare status of splits
Direct entry points to "tqDist" functions
Add slice to 3D array
Check tree size
Normalize element statuses to generate metric
Status vector to matrix
Status of quartets that exist in two trees
Pair shared split status
Plot quartet on tree topologies
Quartet
Plot tree differences on ternary plots
Quartet State(s)
Status of quartets
Count resolved quartets
Tree similarity measures
Matching partitions
Plot contours of equal symmetric difference on a ternary plot
Wrapper for tqDist
Direct entry points to 'tqDist' functions
tqDist file generator
Validate filenames
Visualize quartet difference on trees, by split
Calculates the number of four-taxon subtrees consistent with a pair of cladograms, calculating the symmetric quartet distance of Bandelt & Dress (1986), Reconstructing the shape of a tree from observed dissimilarity data, Advances in Applied Mathematics, 7, 309-343 <doi:10.1016/0196-8858(86)90038-2>, and using the tqDist algorithm of Sand et al. (2014), tqDist: a library for computing the quartet and triplet distances between binary or general trees, Bioinformatics, 30, 2079–2080 <doi:10.1093/bioinformatics/btu157> for pairs of binary trees.
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