SingleCellComplexHeatMap0.1.2 package

Complex Heatmaps for Single Cell Expression Data with Dual Information Display

create_cell_annotations

Create Cell Type and Time Point Annotations for Heatmap Columns

create_gene_annotations

Create Gene Group Annotations for Heatmap Rows

create_single_cell_complex_heatmap

Create Complex Heatmap for Single Cell Expression Data

get_colors_simplified

Get colors with simplified approach

prepare_expression_matrices

Prepare Expression and Percentage Matrices from Seurat DotPlot

Download source packageRead PDF manual

Creates complex heatmaps for single cell RNA-seq data that simultaneously display gene expression levels (as color intensity) and expression percentages (as circle sizes). Supports gene grouping, cell type annotations, and time point comparisons. Built on top of 'ComplexHeatmap' and integrates with 'Seurat' objects. For more details see Gu (2022) <doi:10.1002/imt2.43> and Hao (2024) <doi:10.1038/s41587-023-01767-y>.

  • Maintainer: XueCheng Fang
  • License: MIT + file LICENSE
  • Last published: 2025-06-28

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