Fitting Separable Nonlinear Models in Spectroscopy and Microscopy
Class "amp" for diagonal matrix model specification.
Baseline subtraction from a vector, usually representing an IRF.
Class "dat" for model and data storage
Plots a matrix with a diverging palette, with the center value of the ...
Convert 'tim' FORTRAN efit files to plain matrices in ASCII files
Examines the results of a call to fitModel
Class "fit" to store the results of model fitting associated with all ...
Performs optimization of (possibly multidataset) models.
Functions to plot FLIM results.
Generic function getClpindepX in Package `TIMP'
For data correction, fits a model (but ignores plotting commands) in o...
Functions to print and return parts of the object returned by the fitt...
Defines the model to be used in analysis.
TIMP function used internally
Class "kin" for kinetic model storage.
Class "kinopt" stores options for fitting and plotting kinetic models
Class "mass" for mass spectrometry model storage.
Class "massopt" stores options for fitting and plotting models for mas...
Allows the starting values for parameters associated with a model to b...
Class "multimodel" for storage of multidataset models, data and the re...
Class "multitheta" that stores a list with one element of class "theta...
Class "opt" stores options for fitting and plotting
Finds and removes outliers from a datasets
Generic function plotter in Package `TIMP'
Performs preprocessing on data stored as an objects of class dat.
This function reads in a specification of constraints to zero on the c...
This function reads in data the ivo file format
Class "res" to store the results of model fitting associated with a si...
Generic function residPart in Package `TIMP'
Class "spec" for the storage of spectral models.
Class "specopt" stores options for fitting and plotting spectral model...
Makes a summary plot of spectra associated with kinetic components alo...
Class "theta" for storage of nonlinear parameter estimates
a problem solving environment for fitting separable nonlinear models i...
Writes the average of scans stored in a file to a new file in the 'ivo...
A problem solving environment (PSE) for fitting separable nonlinear models to measurements arising in physics and chemistry experiments, as described by Mullen & van Stokkum (2007) <doi:10.18637/jss.v018.i03> for its use in fitting time resolved spectroscopy data, and as described by Laptenok et al. (2007) <doi:10.18637/jss.v018.i08> for its use in fitting Fluorescence Lifetime Imaging Microscopy (FLIM) data, in the study of Förster Resonance Energy Transfer (FRET). `TIMP` also serves as the computation backend for the `GloTarAn` software, a graphical user interface for the package, as described in Snellenburg et al. (2012) <doi:10.18637/jss.v049.i03>.