Gene Set Analysis Toolkit WebGestaltR
Affinity Propagation
cacheUrl
Create HTML Report for NTA
createReport
enrichResultSection
Expand enriched GO IDs to include ancestors up to the root
Fill relation data frame for GSEA input
Check Format and Read Data
GO Slim Summary
Permutaion in GSEA algorithm
ID Mapping
Jaccard Similarity
keepRep
Modify the link to highlight the genes in the pathways
List WebGestalt Servers
List Gene Sets
List ID Types
List Organisms
List Reference Sets
Load gene set data
Prepare input for standard GSEA
Prepare Input Matrix for GSEA
Read GMT File
specificParameterSummaryGsea
specificParameterSummaryOra
summaryDescription
Site Weighted Gene Set Enrichment Analysis
WebGestaltR: The R interface for enrichment analysis with WebGestalt.
Weighted Set Cover
The web version WebGestalt <https://www.webgestalt.org> supports 12 organisms, 354 gene identifiers and 321,251 function categories. Users can upload the data and functional categories with their own gene identifiers. In addition to the Over-Representation Analysis, WebGestalt also supports Gene Set Enrichment Analysis and Network Topology Analysis. The user-friendly output report allows interactive and efficient exploration of enrichment results. The WebGestaltR package not only supports all above functions but also can be integrated into other pipeline or simultaneously analyze multiple gene lists.