Clinical Data Review Tool
Add date of report running
Add facet-panel to single plotly plot.
Helper function to add layer to scatter plot
Add reference (horizontal/vertical/diagonal) lines to a clinical data ...
Add selection box(es) to a plotly plot.
Add a watermark to a plotly object.
Annotate a dataset.
Barplot visualization of clinical data.
Boxplot interactive plot.
Build the book
Check availability of arguments in list
Check if a chapter is run internally in parallel or not.
Check a configuration file (in YAML format) based on a requirement f...
Check report titles
Checks of config files template.
Check if the specified valueType parameter can be passed to the `bra...
Common parameters for the clinical data reporting function
Common arguments for the plotting functions summary statistics of the ...
Common arguments for the functions of the clinDataReview package
Rmarkdown templates for clinical data
Function to create collapsible HTML content
Combine select box(es) and the plot
Convert the Md file for a specific chapter to html
Convert report format from .html to .aspx
Count number of lines in a vector
Create the skeleton of a report
Create an example metadata file
Create the config file for the skeleton
Create a output YAML file
Create link to patient profile
Create a redirect page
Create documentation for clinical data template reports available in t...
Interactive plot of confidence interval/error interval of clinical dat...
Combine all session informations across all clinical data reports and ...
Filter a dataset based on specified filters.
Filter data for a single filter
Force the evaluation of the parameters from config file.
Format data for interactive plot for clinical data
Format hover text for use in plotly interactive plots. The labels are ...
Format the info on paths from metadata
Format interactive plot, with possibility to download patient profiles...
Format data to a hierarchical data, in the format as required by the p...
Get axis label
Set different variables for the x-axis labels
Get axis limits for a ggplot plot from the input dataset.
Extract data for the reference lines
Get plot dimensions
Get extra directory(ies) required for the clinical data review report
Get facetting variables from facet parameters.
Get function code
Get the names of the ggplot function to use for the reference lines
Get height of labels: title, subtitle or caption
Get HTML toc
Get index of the line containing the HTML title in a vector of HTML st...
Get interim res file
Add jitter to the variable of the plot, based on the different groups ...
Get Javascript custom scripts required for specific clinical data func...
Get path of the HTML file corresponding to a specific config file.
Get Markdown header, for creation in Rmarkdown.
Read metadata file
Get parameters from a config file
Get parameter of function used for reference lines
Get path ('href') property from hyperlink(s).
Get path of template clinical data report
Extract variables displayed in the attached table, for each available ...
Get margins and positions of specific elements for a clinical data plo...
Get dimensions for a clinical data plot
Get TOC numbering
Get a watermark, to be included in a clinical visualization
Clinical data format for bookdown report.
Clinical data format for rmarkdown report.
Get R Documentation from a JSON schema.
Print clinDataReviewTable object in a knitted document (e.g. Rmarkdo...
Print metadata file in the clinical data report
Include output from clinical data, or list of such outputs in a Rmarkd...
Set layout for a clinical data plot.
Merge multiple session information
Move skeleton files from the package to a directory
Move data sets from clinUtils
Interactive plot of 'count' data
Convert clinical data Markdown files to HTML
Print a clinDataReview object in the console
Process a dataset.
Rename variable names of metadata info
Render a clinical data review report.
Render one chapter of a clinical report, based on a configuration file
Render a rmarkdown file, possibly in a new R session
Scatterplot of variables of interest for clinical data visualization.
Set facetting layout for 'wrap' facetting.
Get standard palette for the staticScatterplotClinDatafunction.
Split a chapter based on the 'split_by' parameter.
Scatterplot of variables of interest for clinical data visualization
Sunburst interactive plot.
Create a 'clinical data table', associated to a plot.
Visualize time intervals across subjects/parameters.
Transform data.
Treemap interactive plot.
Get formula for a specific variable, to be used in aesthetic specifica...
Zip the clinical data report
Creation of interactive tables, listings and figures ('TLFs') and associated report for exploratory analysis of data in a clinical trial, e.g. for clinical oversight activities. Interactive figures include sunburst, treemap, scatterplot, line plot and barplot of counts data. Interactive tables include table of summary statistics (as counts of adverse events, enrollment table) and listings. Possibility to compare data (summary table or listing) across two data batches/sets. A clinical data review report is created via study-specific configuration files and template 'R Markdown' reports contained in the package.
Useful links