ebmstate0.1.5 package

Empirical Bayes Multi-State Cox Model

cumhazCIs_for_target_transition

Ancillary function of boot_ebmstate.

ebmstate-package

Empirical Bayes multi-state Cox model

extract_function

Ancillary function to boot_ebmstate.

cumhaz_splines

Spline approximations of the cumulative hazard functions

boot_coxrfx

Bootstrap confidence intervals for regression coefficients

boot_ebmstate

Bootstrap samples and bootstrap interval estimates

boot_probtrans

Bootstrap confidence intervals for transition probabilities

CIs_for_target_state

Ancillary function of boot_ebmstate.

convolute_clockforward

Convolution function for clock-forward models

convolute_clockreset

Convolution function for clock-reset models

CoxRFX

Empirical Bayes, multi-state Cox model

joint_cum_hazard_function

Compute the cumulative hazard of leaving a given state

loo_ebmstate

Leave-one-out estimation

MakeInteger

Convert factor to integer.

msfit_generic

Compute subject-specific transition hazards.

print.coxrfx

Print method for CoxRFX objects

print.msfit

Print method for msfit objects generated by msfit_generic

probtrans_by_convolution_clockforward

Compute transition probabilities under a clock-forward model using a c...

probtrans_by_convolution_clockreset

Compute transition probabilities under a clock-reset model using a con...

probtrans_by_convolution

Compute all transition probabilities from a given state using convolut...

probtrans_ebmstate

Compute subject-specific transition probabilities using convolution.

probtrans_fft

Compute subject-specific transition probabilities using a convolution ...

probtrans_mstate

Compute subject-specific or overall transition probabilities

successful_transitions

Find the unique possible path until an absorbing state

summary.coxrfx

A summary method for CoxRFX models

unique_paths

Find all possible paths until absorption from a given starting state

Implements an empirical Bayes, multi-state Cox model for survival analysis. Run "?'ebmstate-package'" for details. See also Schall (1991) <doi:10.1093/biomet/78.4.719>.

  • Maintainer: Rui Costa
  • License: GPL (>= 3)
  • Last published: 2024-10-19