geomorph4.0.9 package

Convert landmark data matrix into array (p x k x n)

Analysis of bilateral symmetry

Build 3D surface template

Combine separate landmark configurations

Comparisons of Effect Sizes from Modularity Analyses

Comparing net rates of shape evolution on phylogenies

Comparing net rates of evolution among traits on phylogenies

Comparisons of Phylogenetic Signal Effect Sizes

Comparisons of Effect Sizes from Partial Least Squares

Comparisons of Effect Sizes from Overall Integration Analyses

Subset landmark coordinates via a factor

Define links between landmarks

Define modules (landmark partitions)

Select points to "slide" along curves

Calculate semilandmarks along a curve

Digitize 3D landmarks on mesh3d object

Digitize 2D landmarks on .jpg files

Digitize 3D fixed landmarks and surface semilandmarks

Edit 3D template

Estimate locations of missing landmarks

Extended Phylogenetic ANOVA/regression for Procrustes shape variables

Identify specimen closest to the mean of a set of Procrustes shape var...

Rotate a subset of 2D landmarks to common articulation angle

Geometric morphometric analyses for 2D/3D data

Create a data frame with shape data

Quantify global integration relative to self-similarity

This function is a wrapper for the function measurement.error in RRPP

Principal and phylogenetically-aligned components analysis of shape da...

Generalized Procrustes analysis of points, curves, and surfaces

Set up parameters for grids, points, and links in plotRefToTarget

Quantify morphological integration between modules

Quantify integration in a set of traits

Calculate linear distances between landmarks

Convert geomorph plots to ggplot objects

Evaluate the degree of modular signal in shape data

Morphological disparity for one or more groups of specimens

Estimate mean shape for a set of aligned specimens

Handle missing values in rrpp.data.frame objects

Quantify phylogenetic morphological integration between two or more se...

Evaluate the degree of phylogenetic modular signal in Procrustes shape...

Assessing dimensions of phylogenetic signal in Procrustes shape variab...

Assessing phylogenetic signal in Procrustes shape variables

Assessing phylogenetic signal effect size in Procrustes shape variable...

Pick points in geomorph scatterplots to visualize shape variation

Plot Function for geomorph

Plot Function for geomorph

Plot Function for geomorph

Plot Function for geomorph

Plot Function for geomorph

Plot Function for geomorph

Plot Function for geomorph

Plot Function for geomorph

Plot Function for geomorph

Plot Function for geomorph

Plot Function for geomorph

Plot Function for geomorph

Plotting to assist visualization of shape-size covariation (allometry)

Plot landmark coordinates for all specimens

Find potential outliers

Plot shape differences between a reference and target specimen

Plot 3D specimen, fixed landmarks and surface semilandmarks

Print/Summary Function for geomorph

Print/Summary Function for geomorph

Print/Summary Function for geomorph

Print/Summary Function for geomorph

Print/Summary Function for geomorph

Print/Summary function for geomorph

Print/Summary Function for geomorph

Print/Summary Function for geomorph

Print/Summary Function for geomorph

Print/Summary Function for geomorph

Print/Summary function for geomorph

Print/Summary function for geomorph

Print/Summary Function for geomorph

Print/Summary Function for geomorph

Print/Summary Function for geomorph

Print/Summary Function for geomorph

Print/Summary Function for geomorph

Print/Summary Function for geomorph

Print/Summary Function for geomorph

Procrustes ANOVA/regression for Procrustes shape variables

Phylogenetic ANOVA/regression for Procrustes shape variables

Read landmark data from Morphologika file(s)

Read mesh data (vertices and faces) from ply files

Read landmark data matrix from fcsv file

Read landmark data matrix from nts file

Read landmark data from a shapes object (StereoMorph)

Read landmark data from tps file

Read and combine multiple nts files

Read and combine multiple tps files

Rotate or flip landmark or coordinate configurations

Shape prediction from numeric predictors

Update Plots with Convex Hulls for Groups

Print/Summary Function for geomorph

Print/Summary Function for geomorph

Print/Summary Function for geomorph

Print/Summary Function for geomorph

Print/Summary Function for geomorph

Print/Summary Function for geomorph

Print/Summary Function for geomorph

Print/Summary Function for geomorph

Print/Summary Function for geomorph

Print/Summary Function for geomorph

Print/Summary Function for geomorph

Print/Summary Function for geomorph

Print/Summary Function for geomorph

Print/Summary Function for geomorph

Print/Summary Function for geomorph

Print/Summary Function for geomorph

Print/Summary Function for geomorph

Print/Summary Function for geomorph

Print/Summary Function for geomorph

Two-block partial least squares analysis for Procrustes shape variable...

Convert (p x k x n) data array into 2D data matrix

Creates a mesh3d object warped to the mean shape

Creates a 2D outline warped to the mean shape

Write landmark data to tps file