Generalised Linear Mixed Models in R
lme4 style generlized linear mixed model
Extracts the log-likelihood from an mcml object
Extracts the log-likelihood from an mcml object
Generate matrix mapping between data frames
Generates a block experimental structure using Nelder's formula
Generate nested block structure
Predict from a mcml
object
Summarises an mcml fit output
Summarizes a Model
object
Extract the Variance-Covariance matrix for a mcml
object
Calculate Variance-Covariance matrix for a Model
object
lme4 style linear mixed model
Returns the file name and type for MCNR function
For the generalised linear mixed model
A GLMM Model
Map lme4 formula to glmmrBase formula
Generate crossed block structure
Generates all the orderings of a
Extracts the family from a mcml
object.
Extracts the family from a Model
object. This information can also b...
Fitted values from a mcml
object
Extract or generate fitted values from a Model
object
Extracts the fixed effect estimates
Extracts the formula from a mcml
object.
Extracts the formula from a Model
object
tools:::Rd_package_title("glmmrBase")
Automatic differentiation of formulae
Disable or enable parallelised computing
Beta distribution declaration
Extracts fixed effect coefficients from a mcml object
Extracts coefficients from a Model object
Fixed effect confidence intervals for a mcml
object
R6 Class representing a covariance function and data
Generate predictions at new values from a Model
object
Prints an mcml fit output
Generates a progress bar
Family declaration to support quantile regression
Extracts the random effect estimates
Residuals method for a mcml
object
Extract residuals from a Model
object
Specification, analysis, simulation, and fitting of generalised linear mixed models. Includes Markov Chain Monte Carlo Maximum likelihood and Laplace approximation model fitting for a range of models, non-linear fixed effect specifications, a wide range of flexible covariance functions that can be combined arbitrarily, robust and bias-corrected standard error estimation, power calculation, data simulation, and more. See <https://samuel-watson.github.io/glmmr-web/> for a detailed manual.
Useful links