idiogramFISH2.0.13 package

addAttributesDfChrSize

This is an internal function that adds notes

FUNCTIONS armRatioCI and swapChrRegionDfSizeAndMarks.

arrowPlotMark This is an internal function that plot marks

FUNCTIONS asymmetry and asymmetryA2.

checkArmHolocenError This is an internal function that makes list of d...

Function to check names of OTUs (species) among data.frames

Chr. basic data Holo.

Chr. basic data Monocen.

FUNCTIONS: citrusSize, citrusMarkPos, markOverCMA

This is an internal function that eliminates factors

Function to do ceiling at different levels

Mark characteristics

dfToListColumn This is an internal function that makes list of d.fs

filterExtraOTU This is an internal function that filters list of d.f. ...

This function fixes duplicated names when no marks

FUNCTION genBankReadIF

idiogramFISH: Shiny App. Idiograms with Marks and Karyotype Indices

This is an internal function that inserts in vector or list

FUNCTION make.uniqueIF

Function to automatically make a data.frame of Marks' characterisitcs

FUNCTION to make a data.frame of Marks' characterisitcs

These are internal functions that eliminate factors

makeVectorNames This is an internal function that makes a vector of na...

FUNCTIONS mapGGChr and mapGGChrMark (for ggplot)

mapXY This is an internal function that creates coords for chr. or arm...

mapXYCenMimic This is an internal function that creates coords for chr...

Mark Positional data - Holocen.

markDistCenGISHfix This is an internal function that fixes markDistCen...

Mark Positional data - monocentrics

mimicCenPlotMark This is an internal function that plot marks

FUNCTION that modifies marks' names into columns

newOrderColumn This is an internal function that adds neworder column ...

FUNCTION perMark

plotDotMarks This is an internal function that plot dot marks

Plot idiograms of karyotypes/genomes with and without centromere

This is an internal function to plot labels to the right, when "aside"...

sqPlotMarkCP This is an internal function that plot marks

FUNCTION posCalc and fillMarkInfo

removeNAFromList This is an internal function that removes NA from lis...

FUNCTION to produce a Robertsonian translocation

rulerPlot This is an internal function that plots rulers

rulerTitle This is an internal function that plots rulers

FUNCTION runBoard

textLabel This is an internal function that plot labels of cM marks

textLabelDots This is an internal function that plot labels of cM mark...

FUNCTIONS: yVertoHor, xHortoVer, xHortoVerRoundCen, xHortoVerDots, map...