Create Common Tables and Listings Used in Clinical Trials
Exposure-Adjusted Incidence Rate
Analysis function count and percentage in column design controlled by ...
Analysis/statistical function for count and percentage in core columns...
Analysis Function for Response Variables
Analysis function count and percentage with extra column-subsetting in...
Calculate Count and Percentage of the Maximum Level of an Ordered Fact...
Patient years exposure
Formatted Analysis Function For Proportion Confidence Interval for Fac...
Formatted Analysis Function For Proportion Confidence Interval for Log...
Analysis function 3-column presentation
Tabulation for Exposure Tables
Two Tier Analysis Function
Analysis and Content Summary Function Producing Blank Line
Shortcut Layout Function for Standard Continuous Variable Analysis
Assert that rbmi package is installed
Pruning Function for pruning based on a fraction and/or a difference f...
Building Model Formula
c_function for proportion of TRUE in logical vector
Simple Content Row Function to Count Rows from Alternative Data
Simple Content Row Function to Count Rows
Check Word Wrapping
Cochran-Mantel-Haenszel Row Mean Scores test
Summary Analysis Function for Compliance Columns
Split Function for Compliance Columns
Creation of Column Spanning Mapping Dataframe
Creation of Column Spanning Variables
Statistics within the column space
Complex Scoring Function
Conditional Removal of Facets
Formatting functions for count and fraction, and for count denominator...
Count Pruner
Workaround statistics function to add HR with CI
Define Column Widths
Get default statistical methods and their associated formats, labels, ...
Default String Mapping for Special Characters
Predicate to Check if Split Should be Excluded
Custom unlist function
Workaround statistics function to time point survival estimate with CI
Export a VTableTree or a listing_df object into docx
export_graph_as_docx
Helper for Finding AVISIT after which CHG are all Missing
ANCOVA Analysis
MMRM Analysis
Get Control Subset
Extract Least Square Means from MMRM
Obtain Reference Information for a Global Reference Group
Get Titles/Footers For Table From Sources
Get Visit Levels in Order Defined by Numeric Version
Extract Estimates from Multivariate Cox Regression Model Fit Object
Extraction of Covariate Parts from Character Vector
Helper Function to Create Logical Design Matrix from Factor Variable
Get Treatment Variable Reference Path
Helper functions for odds ratio estimation
Helper Function to Fit the MMRM and Return LS Mean Estimates and Contr...
Conversion of inches to spaces.
Insertion of Blank Lines in a Layout
Numeric Formatting Function
Utility for specifying custom formats
Survival time analysis
Pruning Function to accommodate removal of completely NULL rows within...
Adding Labels To Variables For Model
Extract the left-hand side of a formula
Helpers for Processing Least Square Means
Content Row Analysis Function for LS Means Wide Table Layouts
First Level Column Split for LS Means Wide Table Layouts
Second Level Column Split for LS Means Wide Table Layouts
Split Function Helper
Create a rbmi ready cluster
No Data to Report String
Odds ratio estimation
Function Factory to Create Padded In Rows Content
Parallelise Lapply
Difference test for two proportions
Proportion difference estimation
Split Function for Proportion Analysis Columns
Relative Risk CMH Statistic
Formatted Analysis Function for Proportion Analysis
Standard Arguments
Analyse Multiple Imputed Datasets
Implements an Analysis of Covariance (ANCOVA)
Analysis of Covariance
Extract Single Visit Information from a Fitted MMRM for Multiple Imput...
MMRM Analysis for Imputed Datasets
Pool analysis results obtained from the imputed datasets
Add Overall Facet
Relative risk estimation
Removal of Unwanted Column Counts
Pruning function to remove specific rows of a table regardless of coun...
Formatted Analysis Function for Comparative Statistic in Response Tabl...
Formatted Analysis Function for Comparative Statistic in Response Tabl...
Formatted Analysis and Content Summary Function for Response Tables (R...
Content Row Function for Counts of Subgroups in Response Tables (RESP0...
Split Function Factory for the Response Tables (RESP01)
Count denom fraction statistic
Removal of Levels
rm_other_facets_fact
Junco Extended ANCOVA Function
s_function for proportion of factor levels
s_function for proportion of TRUE in logical vector
ANCOVA Summary Function
Safely Prune Table With Empty Table Message If Needed
Set Output Titles
Shortcut for Creating Custom Column Splits
Colwidths for all columns to be forced on one page.
Title Case Conversion
Layout Generating Function for TEFOS03 and Related Cox Regression Layo...
Layout Generating Function for LS Means Wide Table Layouts
Dynamic tabulation of MMRM results with tables
Layout Creating Function Adding Row Counts
Tabulation of Least Square Means Results
Tabulation of RBMI Results
Analysis Function for TEFOS03 and Related Table Layouts
First Level Column Split Function for TEFOS03 (mmy) Table Layout
Second Level Column Split Function Factory for TEFOS03 (mmy) Table Lay...
Get default statistical methods and their associated formats, labels, ...
Obtain the default theme for the docx
Helper method (for broom::tidy()) to prepare a data frame from an `p...
Convert a VTableTree or a listing_df object to a flextable
Create TableTree as DataFrame via gentlg
TableTree to .rtf Conversion
Relabel Variables in a Dataset
Structure and formatting requirements for clinical trial table and listing outputs vary between pharmaceutical companies. 'junco' provides additional tooling for use alongside the 'rtables', 'rlistings' and 'tern' packages when creating table and listing outputs. While motivated by the specifics of Johnson and Johnson Clinical and Statistical Programming's table and listing shells, 'junco' provides functionality that is general and reusable. Major features include a) alternative and extended statistical analyses beyond what 'tern' supports for use in standard safety and efficacy tables, b) a robust production-grade Rich Text Format (RTF) exporter for both tables and listings, c) structural support for spanning column headers and risk difference columns in tables, and d) robust font-aware automatic column width algorithms for both listings and tables.
Useful links