Compute and Illustrate the Multiple Facets of Functional Diversity
Illustrate Functional Diversity indices based on Functional Entities
Compute the set of indices based on number of species in Functional En...
Compute Functional alpha-Diversity indices based on Hill Numbers
Compute a set of alpha functional indices for a set of assemblages
Plot functional space and chosen functional indices
Summarize Assemblage x Species data frame
Plot background of multidimensional plots
Compute Functional beta-Diversity indices based on Hill Numbers
Compute Functional beta-Diversity indices for pairs of assemblages in ...
Illustrate Functional beta-Diversity indices for pairs of assemblages ...
Compute distance of a given point to its nearest neighbor in the funct...
Compute distances of all points to a given point in the functional spa...
Merge distance object(s) into a single data frame
Plot FDis index
Plot FDiv indice
Plot FEve index
Plot FIde index
Plot FNND index
Plot FOri
Plot FRic index
Plot FSpe
Compute functional distance between species
Plot species position in a functional space
Compute FUSE (Functionally Unique, Specialized and Endangered)
mFD: Compute and Illustrate the Multiple Facets of Functional Diversit...
Compute the Minimum Spanning Tree (MST) linking species of a given ass...
Plot individual plots along a pair of functional axes into a unique gr...
Plot species from the pool
Plot functional space quality with a chosen quality metric
Compute functional spaces and their quality
Retrieve information about species in a given assemblage
Compute Functional Entities composition based on a Species x Traits ma...
Summarize Species x Traits data frame
Build a functional space based on continuous traits only
Scale continuous traits
Correlation between Traits and Axes
Compute vertices of the Minimal Convex Hull shaping species from a sin...
Computing functional traits-based distances between pairs of species for species gathered in assemblages allowing to build several functional spaces. The package allows to compute functional diversity indices assessing the distribution of species (and of their dominance) in a given functional space for each assemblage and the overlap between assemblages in a given functional space, see: Chao et al. (2018) <doi:10.1002/ecm.1343>, Maire et al. (2015) <doi:10.1111/geb.12299>, Mouillot et al. (2013) <doi:10.1016/j.tree.2012.10.004>, Mouillot et al. (2014) <doi:10.1073/pnas.1317625111>, Ricotta and Szeidl (2009) <doi:10.1016/j.tpb.2009.10.001>. Graphical outputs are included. Visit the 'mFD' website for more information, documentation and examples.
Useful links