mgi.report.reader0.1.3 package

Read Mouse Genome Informatics Reports

report_example

Report example

chromosomes

Mouse chromosomes

common-args

Common arguments

feature_types

Genome Feature types

is_mgi_identifier

MGI accession identifier checking

marker_types

Genetic marker types

mgi_base_url

MGI base URL

mgi_reports_base_url

MGI reports base URL

mgi_reports_index_url

MGI reports index URL

mgi.report.reader-package

mgi.report.reader: Read Mouse Genome Informatics Reports

open_marker_id_in_mgi

Browse MGI markers identifiers online

open_marker_symbol_in_mgi

Browse MGI markers symbols online

read_report

Read an MGI report

read_symbol_map

Read marker symbol mappings

read_symbol_to_id_map

Read marker symbol to identifier mappings

report_last_modified

Report last modification date

report_source

Report source

report-attributes

Get MGI report specs by report key

sure

Are you sure?

symbol_to_identifier

Convert marker symbols to updated marker identifiers

symbol_to_symbol

Update marker symbols

Download source packageRead PDF manual

Provides readers for easy and consistent importing of Mouse Genome Informatics (MGI) report files: <https://www.informatics.jax.org/downloads/reports/index.html>. These data are provided by Baldarelli RM, Smith CL, Ringwald M, Richardson JE, Bult CJ, Mouse Genome Informatics Group (2024) <doi:10.1093/genetics/iyae031>.

  • Maintainer: Ramiro Magno
  • License: MIT + file LICENSE
  • Last published: 2024-07-07

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