nexus0.3.0 package

Sourcing Archaeological Materials by Chemical Composition

aggregate

Compute Summary Statistics of Data Subsets

arithmetic

Operations in the Simplex

as_amounts

Coerce to Amounts

as_composition

Coerce to a Closed Compositional Matrix

as_graph

Graph of Log-ratios

barplot

Barplot of Compositional Data

bind

Combine Two Composition Matrices

chemistry

Chemical Elements and Oxides

closure

Closure Operation

CompositionMatrix-class

Compositional Matrix

condense

Compositional Mean of Data Subsets

covariance

Covariance Matrix

describe

Data Description

detect_outlier

Outlier Detection

dist

Distances

extract

Group-based Subset

gmean

Geometric Mean

groups

Working With Groups

hist

Histogram of Compositional Data

LogicalMatrix-class

Logical Matrix

LogRatio-class

Log-Ratio Matrix

mahalanobis

Mahalanobis Distance

margin

Marginal Compositions

mean

Compositional Mean

missing

Missing Values Policy

mix

Mixed-Mode Analysis

mutators

Get or Set Parts of an Object

nexus-package

nexus: Sourcing Archaeological Materials by Chemical Composition

NumericMatrix-class

Numeric Matrix

OutlierIndex-class

Outliers

pca

Principal Components Analysis

perturbation

Perturbation Operation

pip

Proportionality Index of Parts (PIP)

plot_logratio

Plot Log-Ratios

plot_outlier

Plot Outliers

plot

Plot Compositional Data

powering

Powering Operation

quantile

Sample Quantiles

reexports

Objects exported from other packages

replace_NA

Missing Values Replacement

replace_zero

Zero-Replacement

scalar

Scalar Product

scale

Scaling and Centering of Compositional Data

split

Divide into Groups

subset

Extract or Replace Parts of an Object

t

Matrix Transpose

totals

Row Sums

transform_alr

Additive Log-Ratios (ALR)

transform_clr

Centered Log-Ratios (CLR)

transform_ilr

Isometric Log-Ratios (ILR)

transform_inverse

Inverse Log-Ratio Transformation

transform_lr

Pairwise Log-Ratios (LR)

transform_plr

Pivot Log-Ratios (PLR)

univariate_ilr

Univariate Isometric Log-Ratios (ILR)

variance_total

Total Variance

variance

Log-Ratios Variances

variation

Variation Matrix

Exploration and analysis of compositional data in the framework of Aitchison (1986, ISBN: 978-94-010-8324-9). This package provides tools for chemical fingerprinting and source tracking of ancient materials.

  • Maintainer: Nicolas Frerebeau
  • License: GPL (>= 3)
  • Last published: 2024-09-03