packDAMipd1.1.0 package

Function to estimate the cost of liquids when IPD is in long format

Function to do some checks before plotting sensitivity analysis result...

Function to do some checks before plotting sensitivity analysis result...

Function to do some checks before plotting sensitivity analysis result...

Function to return the two parameters from a given expression separate...

Function to get the details of the outcome column

Get the definition of given parameter distribution defined in a file

Get the parameter values from reading a file

Function to estimate the cost of liquids taken (from IPD)

Get the parameter values using the provided statistical regression met...

Get the parameter values from reading a file

Function to get cols for the pattern given

help function to keep slope and intercept portion ready in mixed model...

help function to keep slope and intercept portion ready in mixed model...

help function to keep slope and intercept portion ready in mixed model...

Function to get the details of the time point column

Function to get the details of the trial arm

Get the attribute for the health state

Definition of health state class or health state constructor

Define an all zero trace matrix

Define an all zero trace matrix

Function to do some checks before plotting sensitivity analysis result...

Function to list probabilistic sensitivity analysis results parameterw...

Function to load the file containing trial data and return it

Make a string of covariates using addition sign

Function to map EQ5D5L scores to EQ5D3L scores and then add to IPD dat...

Function to to read the text form of resource use and replace it with ...

Definition of Markov model and trace

Definition of Markov model and trace

Function to get sum of entries of resource per individual at diff time...

Function to assign the values of nested parameters from the parameter ...

Estimation of ICER and NMB

Function to check the equality of column contents between two data set...

Function to check the sum of column contents between two data sets wit...

Function to check if the parameters are sufficient to define a distrib...

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Function to find the keyword for family of distribution in glm

check the list of Markov models

Function to check the variable null or NA

Check the transition probabilities for numeric values and unity row su...

Function to return treatment arm

Check if the values of health states are provided

Checks the input to run the Markov cycles and picks correct method

Function to do some checks before plotting sensitivity analysis result...

Join Markov model objects

Join health states

Convert frequency medication to given basis

Convert period to given basis

Convert volume to given basis

Convert unit strength to given basis

Convert weight per time to given basis

Convert wt per unit volume to given basis

Function to estimate the cost of inpatient admission but taken from GP...

Function to estimate the cost of inpatient admission but taken from GP...

Function to estimate the cost of liquids when IPD is in long format

Function to estimate the cost of liquids taken (from IPD)

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Function to estimate the cost of patches taken (from IPD)

Function to estimate the cost of tablets when IPD is in long format

Function to estimate the cost of tablets taken as an average cost per ...

Function to estimate the cost of tablets taken (from IPD)

Function to estimate the cost of resource use taken (from IPD)

create new dataset while keeping cox regression results and returned c...

Create a table to compare the descriptive analysis (short) from gtsumm...

Create a table to compare the descriptive analysis from gtsummary of t...

Function to return a list of parameters given

Define parameter lists for deterministic sensitivity analysis

ISLR flextable huxtable nlme tm Define parameter lists for determinist...

Define the table for transition

Do the diagnostic test for glm model assumption

Do the diagnostic test for lm model assumption

Function to do probabilistic sensitivity analysis

Function to do deterministic sensitivity analysis

Function to get the codes and the corresponding entries

Attribute parameters to probabilities of transition matrix

Attribute values in health states

Function to find the keyword for family of distribution in glm

Function to find the keyword for generating random numbers the distrib...

Function to find the keyword for regression methods

Function to return parameters with in a expression containing operator...

Function to find the parameters that determine the probability distrib...

Function to get sum of multiple columns of observations

Function to find the keyword for survreg distribution

Form expression to use with glm()

Form expression to use with lm()

Form expression to use with mixed models

Function to get the weight and time units

Function to get the weight and volume units

Function to get the details of the age column

Function to keep the column name, coded values and non response code i...

Function to extract the unit hospital inpatient admission by matching ...

Function to extract the unit cost by descirption of AandE att matching...

Function to extract the unit hospital inpatient admission by matching ...

Function to extract the unit hospital inpatient admission by matching ...

Convert the combined dose to its individual component numerical value ...

Convert the combined dose to its individual component numerical value ...

Function to get the details of the EQ5D column

Function to get extension of a file name

Function to get the details of the gender column

Function to return mean age from a data frame

Get the mortality rate values from reading a file

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Function to estimate the cost of patches taken (from IPD)

Function to estimate the cost of tablets when IPD is in long format

Function to estimate the cost of tablets taken (from IPD)

Function to plot CEAC

Function to plot results of sensitivity analysis do_sensitivity_analys...

Function to do some checks before plotting sensitivity analysis result...

Plot efficiency frontier

Function to plot mean and SE for longitudinal observations for twogrou...

Function to plot mean and SE for longitudinal observations for twogrou...

E1. Plot a Markov model

Plot cost effectiveness acceptability curve

Plot the predicted survival curves for covariates keeping the others f...

Plotting and return the residuals after cox proportional hazard model

Plotting and return the residuals after survival model

Plotting survival function for all covariates using survfit

Plotting survival function for all covariates calculated from cox regr...

Populate transition matrix

Predict risk/hazard function for cox ph regression

Do the prediction for regression

Function to report deterministic sensitivity analysis

Function to get the subset of data compared to a string after trimming...

Function to get the subset of data compared to a string after trimming...

Function to get the subset of data compared to a string after trimming...

Function to return 0 if the param is not null or NA trimming the white...

Set the attribute for the health state

Definition of strategy - or arm

Function to summarise and plot probabilistic sensitivity analysis

Create the the values of cost and utility while transition

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Function for generalised linear mixed model

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Function for mixed effect regression

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Bivariate regression for correlated observations

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Function to convert ADL scores to a T score

Function to add EQ5D3L scores to IPD data

Function to add EQ5D5L scores to IPD data

Function to convert promis3a scores to a T score

Function to estimate the cost of tablets taken (from IPD)

Function to check the variable null or NA