Spatial Phylogenetic Analysis
Calculate taxon conservation benefit
Pairwise distances among clades or nodes
Load California moss spatial phylogenetic data
phylospatial: Spatial Phylogenetic Analysis
Create a spatial phylogenetic object
Plot alternative lambda values
Plot a phylospatial object
Add community dissimilarity data to a phylospatial object
Categorical Analysis of Neo- and Paleo-Endemism (CANAPE)
Binary randomization tests including CANAPE
Quantitative phylogenetic dissimilarity
Calculate spatial phylogenetic diversity and endemism metrics
Get phylospatial community data
Community phylogenetic ordination
Phylogenetic conservation prioritization
Null model randomization analysis of alpha diversity metrics
Evaluate region numbers
Cluster analysis to identify phylogenetic regions
Map phylospatial data onto RGB color bands
Simulate a toy spatial phylogenetic data set
Stratified randomization of community matrix
Convert a site-by-variable matrix into a SpatRaster or sf object
Analyze spatial phylogenetic diversity patterns. Use your data on an evolutionary tree and geographic distributions of the terminal taxa to compute diversity and endemism metrics, test significance with null model randomization, analyze community turnover and biotic regionalization, and perform spatial conservation prioritizations. All functions support quantitative community data in addition to binary data.
Useful links