Visually Assessing the Specificity and Informativeness of Primer Pairs
Maps a nucleotide database accession to a taxonomy database taxId
Summarize pairwise differences.
Multiple sequence alignment with clustal omega
Filter out sequences retrieved by search_primer_pair() that are either...
Retrieves a fasta sequence from NCBI nucleotide database.
Retrieves fasta sequences from NCBI nucleotide database.
Retrieve the taxonomy information from NCBI for a set of nucleotide gi...
identify the point closest to the mouse click only works on single ran...
layout a tree using ape, return an object to be plotted by plot_tree
Parse the primer hits
plots a tree along with a series of taxonomic ranks
plots a tree, optionally with colored and labeled points by taxonomic ...
plot function for a primerTree object, calls plot_tree_ranks
Query a pair of primers using ncbi's Primer-BLAST, if primers contain ...
primerTree Visually Assessing the Specificity and Informativeness of...
Automatic primer search Search a given primer pair, retrieving the ali...
Method for primerTree objects
Get a summary of sequence lengths from a primerTree object
Summarize a primerTree result, printing quantiles of sequence length a...
Construct a neighbor joining tree from a dna alignment
Identifies potential target sequences for a given set of primers and generates phylogenetic trees annotated with the taxonomies of the predicted amplification products.