Calculation of IBD Probabilities
Extract Probabilities for markers
Helper function for plotting the pedigree
Helper function for plotting probabilities for all genotypes
Concatenate function for objects of class IBDprob
Calculate IBD probabilities
Plot function for objects of class IBDprob
Read IBD probabilities from file
Read IBD probabilities
Helper function for plotting probabilities for a single genotype
statgenIBD: Calculation of IBD Probabilities
Summary function for objects of class IBDprob
Write to Flapjack format
Write IBD probabilities to file.
For biparental, three and four-way crosses Identity by Descent (IBD) probabilities can be calculated using Hidden Markov Models and inheritance vectors following Lander and Green (<https://www.jstor.org/stable/29713>) and Huang (<doi:10.1073/pnas.1100465108>). One of a series of statistical genetic packages for streamlining the analysis of typical plant breeding experiments developed by Biometris.
Useful links