teal.modules.clinical0.12.0 package

'teal' Modules for Standard Clinical Outputs

add_expr

Expression List

arm_ref_comp_observer

Observer for Treatment reference variable

as_num

Parse text input to numeric vector

bracket_expr

Expressions in Brackets

call_concatenate

Concatenate expressions via a binary operator

check_arm_ref_comp

Check if the Treatment variable is reference or compare

clean_description

Clean up categorical variable description

color_lab_values

Mapping function for Laboratory Table

column_annotation_label

Get full label, useful for annotating plots

control_tte

Control Function for Time-To-Event teal Module

cs_to_des_filter

Convert choices_selected to data_extract_spec with only filter_spec

cs_to_des_select

Convert choices_selected to data_extract_spec with only select_spec

cs_to_filter_spec

Convert choices_selected to filter_spec

cs_to_select_spec

Convert choices_selected to select_spec

default_total_label

Default string for total column label

ex_data

Simulated CDISC Data for Examples

extract_input

Extracts html id for data_extract_ui

facet_grid_formula

Facetting formula x_facet ~ y_facet

get_g_forest_obj_var_name

Utility function for extracting paramcd for forest plots

get_paramcd_label

Extract the associated parameter value for paramcd

get_var_labels

Get variable labels

h_concat_expr

Expression Deparsing

is.cs_or_des

Whether object is of class teal.transform::choices_selected()

make_barchart_simple_call

ggplot2 call to generate simple bar chart

module_arguments

Standard Module Arguments

pipe_expr

Expressions as a Pipeline

prepare_arm_levels

Expression: Prepare Arm Levels

prepare_arm

Expression: Arm Preparation

select_decorators

Subset decorators based on the scope

set_chunk_attrs

Set the attributes of the last chunk outputs

set_chunk_dims

Create a reactive that sets plot dimensions on a teal_card

split_choices

Split choices_selected objects with interactions into their componen...

split_col_expr

Split-Column Expression

split_interactions

Split interaction terms into their component variables

srv_decorate_teal_data

Wrappers around srv_transform_teal_data that allows to decorate the ...

substitute_names

Substitute Names in a Quoted Expression

substitute_q

Substitute in Quoted Expressions

teal.modules.clinical-package

teal Modules for Standard Clinical Outputs

template_a_gee

Template for Generalized Estimating Equations (GEE) analysis module

template_abnormality_by_worst_grade

Template: Laboratory test results with highest grade post-baseline

template_abnormality

Template: Abnormality Summary Table

template_adverse_events

Template: Patient Profile Adverse Events Table and Plot

template_ancova

Template: ANCOVA Summary

template_arguments

Standard Template Arguments

template_basic_info

Template: Patient Profile Basic Info

template_binary_outcome

Template: Binary Outcome

template_coxreg_m

Template: Multi-Variable Cox Regression

template_coxreg_u

Template: Univariable Cox Regression

template_events_by_grade

Template: Events by Grade

template_events_col_by_grade

Template: Adverse Events Grouped by Grade with Threshold

template_events_patyear

Template: Event Rates Adjusted for Patient-Years

template_events_summary

Template: Adverse Events Summary

template_events

Template: Events by Term

template_exposure

Template: Exposure Table for Risk management plan

template_fit_mmrm

Template: Mixed Model Repeated Measurements (MMRM) Analysis

template_forest_rsp

Template: Response Forest Plot

template_forest_tte

Template: Survival Forest Plot

template_g_ci

Template: Confidence Interval Plot

template_g_ipp

Template: Individual Patient Plots

template_g_km

Template: Kaplan-Meier Plot

template_g_lineplot

Template: Line Plot

template_laboratory

Template: Patient Profile Laboratory Table

template_logistic

Template: Logistic Regression

template_medical_history

Template: Patient Profile Medical History

template_mult_events

Template: Multiple Events by Term

template_patient_timeline

Template: Patient Profile Timeline Plot

template_prior_medication

Template: Patient Profile Prior Medication

template_shift_by_arm_by_worst

Template: Shift by Arm by Worst Analysis Indicator Level

template_shift_by_arm

Template: Shift by Arm

template_shift_by_grade

Template: Grade Summary Table

template_smq

Template: Adverse Events Table by Standardized MedDRA Query

template_summary_by

Template: Summarize Variables by Row Groups Module

template_summary

Template: Summary of Variables

template_therapy

Template: Patient Profile Therapy Table and Plot

template_tte

Template: Time-To-Event

template_vitals

Template: Patient Profile Vitals Plot

tm_a_gee

teal Module: Generalized Estimating Equations (GEE) analysis

tm_a_mmrm

teal Module: Mixed Model Repeated Measurements (MMRM) Analysis

tm_g_barchart_simple

teal Module: Simple Bar Chart and Table of Counts per Category

tm_g_ci

teal Module: Confidence Interval Plot

tm_g_forest_rsp

teal Module: Forest Response Plot

tm_g_forest_tte

teal Module: Forest Survival Plot

tm_g_ipp

teal Module: Individual Patient Plots

tm_g_km

teal Module: Kaplan-Meier Plot

tm_g_lineplot

teal Module: Line Plot

tm_g_pp_adverse_events

teal Module: Patient Profile Adverse Events Table and Plot

tm_g_pp_patient_timeline

teal Module: Patient Profile Timeline Plot

tm_g_pp_therapy

teal Module: Patient Profile Therapy Table and Plot

tm_g_pp_vitals

teal Module: Patient Profile Vitals Plot

tm_t_abnormality_by_worst_grade

teal Module: Laboratory test results with highest grade post-baseline

tm_t_abnormality

teal Module: Abnormality Summary Table

tm_t_ancova

teal Module: ANCOVA Summary

tm_t_binary_outcome

teal Module: Binary Outcome Table

tm_t_coxreg

teal Module: Cox Regression Model

tm_t_events_by_grade

teal Module: Events by Grade

tm_t_events_patyear

teal Module: Event Rates Adjusted for Patient-Years

tm_t_events_summary

teal Module: Adverse Events Summary

tm_t_events

teal Module: Events by Term

tm_t_exposure

teal Module: Exposure Table for Risk management plan

tm_t_glm_counts

Teal Module: Regression Counts Summary

tm_t_logistic

teal Module: Logistic Regression

tm_t_mult_events

teal Module: Multiple Events by Term

tm_t_pp_basic_info

teal Module: Patient Profile Basic Info

tm_t_pp_laboratory

teal Module: Patient Profile Laboratory Table

tm_t_pp_medical_history

teal Module: Patient Profile Medical History

tm_t_pp_prior_medication

teal Module: Patient Profile Prior Medication

tm_t_shift_by_arm_by_worst

teal Module: Shift by Arm by Worst Analysis Indicator Level

tm_t_shift_by_arm

teal Module: Shift by Arm

tm_t_shift_by_grade

teal Module: Grade Summary Table

tm_t_smq

teal Module: Adverse Events Table by Standardized MedDRA Query

tm_t_summary_by

teal Module: Summarize Variables by Row Groups

tm_t_summary

teal Module: Summary of Variables

tm_t_tte

teal Module: Time-To-Event Table

validate_arm

Check if vector is valid as to be used as a treatment arm variable

validate_standard_inputs

Validate standard input values for a teal module

Provides user-friendly tools for creating and customizing clinical trial reports. By leveraging the 'teal' framework, this package provides 'teal' modules to easily create an interactive panel that allows for seamless adjustments to data presentation, thereby streamlining the creation of detailed and accurate reports.

  • Maintainer: Dawid Kaledkowski
  • License: Apache License 2.0
  • Last published: 2025-12-04