Create Custom Plots for Viewing Genetic Association Results
Get SNPs/variants within region
Get the genetic position of a gene by its gene name
Get the top hit from the dataframe
Create a locuszoom-like plot
Create a Manhattan plot
Get the nearest gene for one or more snps
Create a dataframe that can be used as input for making effect plots
Show the code/functions used to create a snpset
Create a plot comparing effects within two datasets
Create a plot comparing variant effects in two datasets
Flip to the positive allele for dataset 1
Get the index/lead variants
Get the genetic position of a gene by gene name
Get the genetic position of a gene by gene name
Get the index/lead variants
Get variants that overlap between two datasets
Get the index/lead variants
Get SNPs/variants within region
Create a dataframe that can be used as input for making effect plots
Show the code/functions used to get a snpset
Get the top hit from the dataframe
Create a Manhattan plot highlighting genome-wide significant and sugge...
Match the variants in the snpset by their alleles
Match the variants in the snpset by their alleles
Get variants that overlap between two datasets
Pipe operator
Create a quantile quantile (QQ) plot
Create a regionplot
topr
A collection of functions for visualizing,exploring and annotating genetic association results.Association results from multiple traits can be viewed simultaneously along with gene annotation, over the entire genome (Manhattan plot) or in the more detailed regional view.