unmarked1.5.0 package

Class "unmarkedEstimate"

Class "unmarkedEstimateList"

Class "unmarkedFit"

Class "unmarkedFitList"

Class "unmarkedFrame"

Methods for Function linearComb in Package `unmarked'

Extract estimates of random effect terms

Estimate posterior distributions of latent occupancy or abundance

Calculate residuals from a model

Estimate posterior distributions of site richness

Methods for Function SE in Package `unmarked'

Launch a Shiny app to help with power analysis

Convert sight distance and sight angle to perpendicular distance.

Extract estimates of random effect standard deviations

Simulate datasets from any unmarked model type

Compute Sum of Squared Residuals for a Model Fit.

Models for Data from Unmarked Animals

Create unmarkedMultFrame from Long Format Data Frame

Convert Poisson mean (lambda) to probability of occurrence (psi).

Fit the multi-species occupancy model of Rota et al. (2016)

Fit the MacKenzie et al. (2002) Occupancy Model with the penalized lik...

Fit the MacKenzie et al. (2002) Occupancy Model with the penalized lik...

Fit the occupancy model of Royle and Nichols (2003)

Fit Single-Season and Dynamic Time-to-detection Occupancy Models

Methods for Function backTransform in Package `unmarked'

Extract Best Unbiased Predictors (BUPs) of latent variables from `rane...

Methods for Function coef in Package `unmarked'

Fit the dynamic occupancy model of MacKenzie et. al (2003)

Compute the penalty weight for the MPLE penalized likelihood method

Methods for Function confint in Package `unmarked'

Cross-validation methods for fitted unmarked models and fit lists

Convert .CSV File to an unmarkedFrame

Distance-sampling detection functions and associated density functions

Fit the hierarchical distance sampling model of Royle et al. (2004)

Open population model for distance sampling data

Methods for bracket extraction [ in Package `unmarked'

Create a list of fitted unmarked models

Calculate fitted (expected) values from a model

Bin distance data

Convert between wide and long data formats.

Fit the combined distance and removal model of Amundson et al. (2014).

Fit the generalized distance sampling model of Chandler et al. (2011).

Methods for Function getB in Package `unmarked'

Methods for Function getFP in Package `unmarked'

Get detection probability matrix from a fitted model

Generalized multinomial N-mixture model

Fit the multi-scale occupancy model of Nichols et al. (2008)

Generalized binomial N-mixture model for repeated count data

Fit the integrated distance sampling model of Kery et al. (2022).

A function to impute missing entries in continuous obsCovs

Create functions to compute multinomial cell probabilities

Model selection on a list of unmarked model fits

Multinomial-Poisson Mixtures Model

Open population multinomial N-mixture model

Fit the N-mixture Time-to-detection Model of Strebel et al. (2021)

Get non-parametric bootstrap samples from an unmarked model

Fit the MacKenzie et al. (2002) Occupancy Model

Fit a community occupancy model with species-level random effects

Fit the occupancy model using count data

Fit occupancy models when false positive detections occur (e.g., Royle...

Fit Multi-State Occupancy Models (Nichols et al. 2007, MacKenzie et al...

Identify Optimal Penalty Parameter Value

Parametric bootstrap for unmarked models

Fit the N-mixture model of Royle (2004)

Fit spatial hierarchical distance sampling model.

Fit the open N-mixture models of Dail and Madsen (2011) and Hostetler ...

Compute multinomial cell probabilities

Plot marginal effects of covariates in unmarked models

Draw samples from the posterior predictive distribution

Conduct a power analysis for an unmarked model

Predict from fitted models and other unmarked objects

Create an unmarkedFrame, or one of its child classes.

Organize data for the distance sampling model of Royle et al. (2004) f...

Create an object of class unmarkedFrameDSO that contains data used by ...

Organize data for the combined distance and removal point-count model ...

Create an object of class unmarkedFrameMMO that contains data used by ...

Organize data for the multinomial-Poisson mixture model of Royle (2004...

Class "unmarkedRanef"

Organize data for the single season occupancy models fit by occu and o...

Organize data for the community occupancy model fit by occuComm

Organize data for the occupancy model using count data fit by `occuCOP...

Organize data for the single season occupancy models fit by occuFP

Methods for Function vcov in Package `unmarked'

Compute Variance Inflation Factors for an unmarkedFit Object.

Organize data for the multi-state occupancy model fit by occuMS

Organize data for the multispecies occupancy model fit by occuMulti

Create an unmarkedFrameOccuTTD object for the time-to-detection model ...

Create an object of class unmarkedFramePCO that contains data used by ...

Organize data for the N-mixture model fit by pcount

unmarkedModSel class and methods

Create an unmarkedMultFrame, unmarkedFrameGMM, unmarkedFrameGDS, or un...

Methods for unmarkedPower objects

Summarize a series of unmarked power analyses