vaccineff1.0.0 package

Estimate Vaccine Effectiveness Based on Different Study Designs

adjust_exposure

Adjust Exposure for Static Matching

balance_summary

Balance of Vaccinated/Unvaccinated Groups

capture_warnings

Capture Warnings

check_dataset

Check Correctness of data_set

check_vaccineff_inputs

Check Correctness of Inputs in make_vaccineff_data

coh_coverage

Calculate Vaccine Coverage

coh_eff_hr

Function to Estimate the Vaccine Effectiveness Using Hazard Ratio

cox_model_prediction

Internal function to calculate prediction from Cox model

cox_model

Internal function to calculate Cox-PH model and related metrics.

estimate_vaccineff

Estimate Vaccine Effectiveness (VE)

extract_surv_model

Internal function to extract summary output from {survival} models.

get_age_group

Construct age-group variable from age column

get_censoring_after_match

Create Censoring date by Pairs

get_exposure_time

Calculate Exposure Time

get_immunization_date

Construct Immunization Date

get_immunization_dose

Return Column Name Associated to Immunizing Vaccine

get_immunization_vaccine

Construct Vaccine Name Associated to Immunizing Vaccine

get_time_to_event_at

Construct Time-to-Event at

iterate_match

Iterate Match

km_model

Internal function to calculate Kaplan-Meier model and related metrics.

make_immunization

Construct Information of Immunization

make_vaccineff_data

Construct vaccineff_data Object

match_cohort_

Match Cohort Using Mahalanobis Distance

match_cohort

Match Cohort to Reduce Observational Bias

match_pair_info

Match Information by Pairs

match_summary

Constructs Summary with Results from Matching

plot_coverage

Plot Vaccine Coverage

plot_loglog

Plot Log-Log Test for Proportional Hazards Hypothesis

plot_survival

Plot the Survival Probability Based on the Kaplan-Meier Model

plot.vaccineff_data

Function for Extracting Vaccineff Data Plot

plot.vaccineff

Function for Extracting Vaccine Effectiveness Plot

print.summary_vaccineff_data

Print Summary of Vaccineff Data

print.summary_vaccineff

Print summary of VE Results

rematch_

Rematch Step for Iterative Match

set_status

Create Status Column

static_match

Static Matching

summary.vaccineff_data

Summarize Vaccineff Data

summary.vaccineff

Summarize VE Results

truncate_from_start_cohort

Internal function to truncate data based on start_cohort

vaccineff-package

vaccineff: Estimate Vaccine Effectiveness Based on Different Study Des...

Provides tools for estimating vaccine effectiveness and related metrics. The 'vaccineff_data' class manages key features for preparing, visualizing, and organizing cohort data, as well as estimating vaccine effectiveness. The results and model performance are assessed using the 'vaccineff' class.

  • Maintainer: Zulma M. Cucunubá
  • License: MIT + file LICENSE
  • Last published: 2024-11-29