CKMRpop0.1.3 package

convert an ancestry-matching matrix to a ggplot-able tibble

Return ancestry-matrix-zone masks for different relationship types

Return a string of ancestor abbreviations in the order of the ancestor...

Function to make a vector of all the ancestors of an individual out to...

here is a function to plot a basic ancestry match matrix

Categorize the dominant relationship from an ancestry match matrix

compile pairwise relationships from the samples

Count up the number of different kinds of related pairs and make a plo...

Count and plot the number of mates each individuals has produced offsp...

downsample the number of individuals sampled

Find ancestors and relative of each sampled member of a pedigree

Add bands of transparent colors to denote generations on plots of ance...

Add perimeters around the relationship zones

Just a simple plot function

Download the spip binary and install it where CKMRpop expects it

Exponentiation function for integer arguments

Return a Leslie-like matrix from the spip parameters

Pipe operator

plot an ancestry matrix (or multiple such matrices) from its (their) m...

plot the graph showing the connected components

Prepare input for the DFS relative-finding algorithm

Return a list of the indices of the primary shared ancestors

function to test and use DFS stuff

Return the recaptures from amongst the samples

Return the perimeters of all the relationship zones

Find connected components amongst the related pairs

Run spip in a user-specified directory

Depth first search down the pedigree to N generations.

Depth first search up the pedigree to N generations.

Read in the pedigree, census, and sampling information from the spip r...

file path to be used in a call to spip

return the path where spip should be in the R system paths

return TRUE if spip exists where it should be installed.

print the abbreviated usage information from spip

print the full usage information from spip

Summarize the distribution of number of offspring and number of mates

Summarize annual sex-and-age-specific survival rates from the census i...

Summarise kin-pair information and use it to create uncooked spaghetti...