DynTxRegime4.15 package

Methods for Estimating Optimal Dynamic Treatment Regimes

BOWL-class

Class BOWL

BOWL-methods

Methods Available for Objects of Class BOWL

bowl

Backwards Outcome Weighted Learning.

BOWLBasic-class

Class BOWLBasic

BOWLBasic-methods

Methods Available for Objects of Class BOWLBasic

BOWLObj-class

Class BOWLObj

buildModelObjSubset

Create Model Objects for Subsets of Data

Call

Retrieve Unevaluated Original Call

classif

Retrieve Classification Regression Analysis

ClassificationFit-class

Class ClassificationFit

ClassificationFit-methods

Methods Available for Objects of Class ClassificationFit

ClassificationFit_fSet-class

Class ClassificationFit_fSet

ClassificationFit_fSet-methods

Methods Available for Objects of Class ClassificationFit_fSet

ClassificationFit_SubsetList-class

Class ClassificationFit_SubsetList

ClassificationFit_SubsetList-methods

Methods Available for Objects of Class ClassificationFit_SubsetList

ClassificationObj-class

Class ClassificationObj

ClassificationObj-methods

Methods Available for Objects of Class ClassificationObj

coef

Extract Model Coefficients From Objects Returned by Modeling Functions

createearl

Create method object for EARL

createowl

Create method object for Outcome Weighted Learning

createrwl

Create method object for Residual Weighted Learning

CVBasic-class

Class CVBasic

CVInfo-class

Class CVInfo

CVInfo-methods

Methods Available for Objects of Class CVInfo

cvInfo

Extract Cross-Validation Results

CVInfo2Par-class

Class CVInfo2Par

CVInfo2Par-methods

Methods Available for Objects of Class CVInfo2Par

CVInfokParam-class

Class CVInfokParam

CVInfokParam-methods

Methods Available for Objects of Class CVInfokParam

CVInfoLambda-class

Class CVInfoLambda

CVInfoLambda-methods

Methods Available for Objects of Class CVInfoLambda

CVInfoObj-class

Class CVInfoObj

CVInfoObj-methods

Methods Available for Objects of Class CVInfoObj

cycleList

apply() for List objects

DecisionPointList-class

Class DecisionPointList

DecisionPointList-methods

Methods Available for Objects of Class DecisionPointList

dot-optimalClass

Perform Classification Step

DTRstep

Identify Statistical Method Used to Obtain Result

DynTxRegime-class

Class DynTxRegime

DynTxRegime-internal-api

Hidden methods

DynTxRegime-methods

Methods Available for Objects of Class DynTxRegime

newIQLearnFS_C

Complete First Stage Analysis of Contrasts for Interactive Q-Learning ...

newIQLearnFS_ME

Complete First Stage Analysis of Main Effects for Interactive Q-Learni...

newIQLearnFS_VHet

Complete First Stage Analysis of Residuals for Interactive Q-Learning ...

newIQLearnSS

Complete Second Stage Analysis of Interactive Q-Learning Algorithm

newKernelObj

Create a KernelObj

EARL-class

Class EARL

EARL-methods

Methods Available for Objects of Class EARL

earl

Efficient Augmentation and Relaxation Learning

estimator

Retrieve the Estimated Value

ExpSurrogate-class

Class ExpSurrogate

ExpSurrogate-methods

Methods Available for Objects of Class ExpSurrogate

fitObject

Objects Returned by Modeling Functions

fittedCont

Retrieve the Fitted Contrast Component from Second Stage IQ-Learning

fittedMain

Retrieve the Fitted Main Effects Component from Second Stage IQ-Learni...

fSet

Defining the fSet Input Variable

genetic

Retrieve the Genetic Algorithm Results

getOutcome

Retrieve Outcome for Both Tx Options When Tx is Binary

getPrWgt

Retrieve Propensity for Tx Received

HingeSurrogate-class

Class HingeSurrogate

HingeSurrogate-methods

Methods Available for Objects of Class HingeSurrogate

HuberHingeSurrogate-class

Class HuberHingeSurrogate

HuberHingeSurrogate-methods

Methods Available for Objects of Class HuberHingeSurrogate

internal-earl-class

Class .earl

internal-earl-methods

Methods Available for Objects of Class .earl

internal-owl-class

Class .owl

internal-owl-methods

Methods Available for Objects of Class .owl

internal-rwl-class

Class .rwl

internal-rwl-methods

Methods Available for Objects of Class .rwl

iqLearn

Interactive Q-Learning

IQLearnFS-class

Class IQLearnFS

IQLearnFS-methods

Methods Available for Objects of Class IQLearnFS

IQLearnFS_C-class

Class IQLearnFS_C

IQLearnFS_C-methods

Methods Available for Objects of Class IQLearnFS_C

IQLearnFS_ME-class

Class IQLearnFS_ME

IQLearnFS_ME-methods

Methods Available for Objects of Class IQLearnFS_ME

IQLearnFS_VHet-class

Class IQLearnFS_VHet

IQLearnFS_VHet-methods

Methods Available for Objects of Class IQLearnFS_VHet

IQLearnSS-class

Class IQLearnSS

IQLearnSS-methods

Methods Available for Objects of Class IQLearnSS

iter

Defining the iter Input Variable

Kernel-class

Class Kernel

Kernel-methods

Methods Available for Objects of Class Kernel

KernelObj-class

Class KernelObj

KernelObj-methods

Methods Available for Objects of Class KernelObj

Learning-class

Class Learning

Learning-methods

Methods Available for Objects of Class Learning

LearningMulti-class

Class LearningMulti

LearningMulti-methods

Methods Available for Objects of Class LearningMulti

LearningObject-class

Class LearningObject

LearningObject-methods

Methods Available for Objects of Class LearningObject

LinearKernel-class

Class LinearKernel

LinearKernel-methods

Methods Available for Objects of Class LinearKernel

List-class

Class List

LogitSurrogate-class

Class LogitSurrogate

LogitSurrogate-methods

Methods Available for Objects of Class LogitSurrogate

MethodObject-class

Class MethodObject

MethodObject-methods

Methods Available for Objects of Class MethodObject

ModelObj_DecisionPointList-class

Class ModelObj_DecisionPointList

ModelObj_SubsetList-class

Class ModelObj_SubsetList

ModelObjSubset-class

Class ModelObjSubset

ModelObjSubset-methods

Methods Available for Objects of Class ModelObjSubset

moPropen

Defining the moPropen Input Variable

MultiRadialKernel-class

Class MultiRadialKernel

MultiRadialKernel-methods

Methods Available for Objects of Class MultiRadialKernel

newBOWL

Create a BOWL Object for First Step of BOWL Algorithm

newBOWLStep

Create a BOWL Object

newClassificationFit

Complete a Classification Regression Step

newClassificationObj

Create an Object of Class ClassificationFitObj

newCVInfo

Create a CVInfo Object

newCVInfoObj

Create a New CVInfoObj Object

newCVStep

An n-Fold Cross Validation Step

newEARL

Complete an EARL Analysis

newLearning

Complete a Learning Analysis

newModel

Combine model object models

newModelObjSubset

Create Internal Model Objects for Subsets of Data

newOptim

Complete an Optimization Step

newOptimalClass

Estimate the Optimal Treatment and Value Using Classification

newOptimalSeq

Complete a the Coarsened/Missing Data Analysis

newOptimObj

Create an OptimObj Object

newOutcomeFit

Perform an Outcome Regression Step

newOutcomeObj

Create a new OutcomeObj object

newOWL

Complete an OWL Analysis

newPropensityFit

Complete a Propensity Regression Step

newPropensityObj

Create a new PropensityObj object

newQLearn

Perform a Step of the Q-Learning Algorithm

newRegime

Create a new Regime object

newRegimeObj

Create a New RegimeObj Object

newRWL-methods

Complete a Residual Weighted Learning Analysis

newRWL

Complete a Residual Weighted Learning Analysis

newTxObj

Create TxObj Object

newTxSubset

Create TxSubset Object

newTypedFit

Complete a Regression Step

newTypedFitObj

Create a new TypedFitObj object

OptimalClass-class

Class OptimalClass

OptimalClass-methods

Methods Available for Objects of Class OptimalClass

optimalClass

Classification Perspective

OptimalClassObj-class

Class OptimalClassObj

OptimalInfo-class

Class OptimalInfo

OptimalInfo-methods

Methods Available for Objects of Class OptimalInfo

OptimalObj-class

Class OptimalObj

OptimalObj-methods

Methods Available for Objects of Class OptimalObj

OptimalSeq-class

Class OptimalSeq

OptimalSeq-methods

Methods Available for Objects of Class OptimalSeq

optimalSeq

Missing or Coarsened Data Perspective - Genetic Algorithm

OptimalSeqCoarsened-class

Class Contains Results for the Coarsened Data IPW/AIPW Method

OptimalSeqCoarsened-methods

Methods Available for Objects of Class OptimalSeqCoarsened

OptimalSeqMissing-class

Class Contains Results for the Missing Data IPW/AIPW Method

OptimalSeqMissing-methods

Methods Available for Objects of Class OptimalSeqMissing

OptimBasic-class

Class OptimBasic

OptimBasic-methods

Methods Available for Objects of Class OptimBasic

OptimKernel-class

Class OptimKernel

OptimKernel-methods

Methods Available for Objects of Class OptimKernel

OptimObj-class

Class OptimObj

OptimObj-methods

Methods Available for Objects of Class OptimObj

optimObj

Extract Optimization Results

OptimStep-class

Class OptimStepClass OptimStep holds results of a combined cross-v...

OptimStep-methods

Methods Available for Objects of Class OptimStep

OptimStep

Complete Cross-Validation Step and Final Optimization

optTx

Extract or Estimate the Optimal Tx and Decision Functions

outcome

Retrieve Outcome Regression Analysis

OutcomeIterateFit-class

Class OutcomeIterateFit

OutcomeIterateFit-methods

Methods Available for Objects of Class OutcomeIterateFit

OutcomeNoFit-class

Class OutcomeNoFit

OutcomeNoFit-methods

Methods Available for Objects of Class OutcomeNoFit

OutcomeObj-class

Class OutcomeObj

OutcomeObj-methods

Methods Available for Objects of Class OutcomeObj

OutcomeSimpleFit-class

Class OutcomeSimpleFit

OutcomeSimpleFit-methods

Methods Available for Objects of Class OutcomeSimpleFit

OutcomeSimpleFit_fSet-class

Class OutcomeSimpleFit_fSet

OutcomeSimpleFit_fSet-methods

Methods Available for Objects of Class OutcomeSimpleFit_fSet

OutcomeSimpleFit_SubsetList-class

Class OutcomeSimpleFit_SubsetList

OutcomeSimpleFit_SubsetList-methods

Methods Available for Objects of Class OutcomeSimpleFit_SubsetList

OWL-class

Class OWL

OWL-methods

Methods Available for Objects of Class OWL

owl

Outcome Weighted Learning

plot

Generates Plots as Defined by Modeling Functions

PolyKernel-class

Class PolyKernel

PolyKernel-methods

Methods Available for Objects of Class PolyKernel

propen

Retrieve Propensity Regression Analysis

PropensityFit-class

Class PropensityFit

PropensityFit-methods

Methods Available for Objects of Class PropensityFit

PropensityFit_fSet-class

Class PropensityFit_fSet

PropensityFit_fSet-methods

Methods Available for Objects of Class PropensityFit_fSet

PropensityFit_SubsetList-class

Class PropensityFit_SubsetList

PropensityFit_SubsetList-methods

Methods Available for Objects of Class PropensityFit_SubsetList

PropensityObj-class

Class PropensityObj

PropensityObj-methods

Methods Available for Objects of Class PropensityObj

QLearn-class

Class QLearn

qLearn

A Step of the Q-Learning Algorithm

QLearnObj-class

Class QLearnObj

RadialKernel-class

Class RadialKernel

RadialKernel-methods

Methods Available for Objects of Class RadialKernel

Regime-class

Class Regime

Regime-methods

Methods Available for Objects of Class Regime

regimeCoef

Extract Regime Parameters

RegimeObj-class

Class RegimeObj

RegimeObj-methods

Methods Available for Objects of Class RegimeObj

residuals

Extract Model Residuals

RWL-class

Class RWL

RWL-methods

Methods Available for Objects of Class RWL

rwl

Residual Weighted Learning

sd

Standard Deviation

seqFunc

Define the Objective Function

SmoothRampSurrogate-class

Class SmoothRampSurrogate

SmoothRampSurrogate-methods

Methods Available for Objects of Class SmoothRampSurrogate

SqHingeSurrogate-class

Class SqHingeSurrogate

SqHingeSurrogate-methods

Methods Available for Objects of Class SqHingeSurrogate

SubsetList-class

Class SubsetList

SubsetList-methods

Methods Available for Objects of Class SubsetList

summary

Result Summaries

Surrogate-class

Class Surrogate

Surrogate-methods

Methods Available for Objects of Class Surrogate

TxInfoBasic-class

Class TxInfoBasic

TxInfoBasic-methods

Methods Available for Objects of Class TxInfoBasic

TxInfoFactor-class

Class TxInfoFactor

TxInfoFactor-methods

Methods Available for Objects of Class TxInfoFactor

TxInfoInteger-class

Class TxInfoInteger

TxInfoInteger-methods

Methods Available for Objects of Class TxInfoInteger

TxInfoList-methods

Methods Available for Objects of Class TxInfoList

TxInfoList

Class TxInfoList

TxInfoNoSubsets-class

Class TxInfoNoSubsets

TxInfoNoSubsets-methods

Methods Available for Objects of Class TxInfoNoSubsets

TxInfoWithSubsets-class

Class TxInfoWithSubsets

TxInfoWithSubsets-methods

Methods Available for Objects of Class TxInfoWithSubsets

TxObj-class

Class TxObj

TxObj-methods

Methods Available for Objects of Class TxObj

TxSubset-class

Class TxSubset

TxSubset-methods

Methods Available for Objects of Class TxSubset

TxSubsetFactor-class

Class TxSubsetFactor

TxSubsetFactor-methods

Methods Available for Objects of Class TxSubsetFactor

TxSubsetInteger-class

Class TxSubsetInteger

TxSubsetInteger-methods

Methods Available for Objects of Class TxSubsetInteger

TypedFit-class

Class TypedFit

TypedFit-methods

Methods Available for Objects of Class TypedFit

TypedFit_fSet-class

Class TypedFit_fSet

TypedFit_fSet-methods

Methods Available for Objects of Class TypedFit_fSet

TypedFit_SubsetList-class

Class TypedFit_SubsetList

TypedFit_SubsetList-methods

Methods Available for Objects of Class TypedFit_SubsetList

TypedFitObj-class

Class TypedFitObj

TypedFitObj-methods

Methods Available for Objects of Class TypedFitObj

Methods to estimate dynamic treatment regimes using Interactive Q-Learning, Q-Learning, weighted learning, and value-search methods based on Augmented Inverse Probability Weighted Estimators and Inverse Probability Weighted Estimators. Dynamic Treatment Regimes: Statistical Methods for Precision Medicine, Tsiatis, A. A., Davidian, M. D., Holloway, S. T., and Laber, E. B., Chapman & Hall/CRC Press, 2020, ISBN:978-1-4987-6977-8.

  • Maintainer: Shannon T. Holloway
  • License: GPL-2
  • Last published: 2023-11-24