Epidemiological Report
Replace a plot at a bookmark location
Cleaning the final table
Clean the MeasureCode variable
Colour palettes following the March 2018 ECDC guidelines for presentat...
Filter disease parameters
Get full disease-specific epidemiological report
Get disease-specific age and gender bar graph
Get disease-specific map: distribution of cases by Member State
Get disease-specific seasonality graph: distribution of cases by month
Get disease-specific table: distribution of cases by Member State (Geo...
Get epidemiological report (empty) template
Get disease-specific trend plot: trend and number of cases by month
Including PNG map in the 'Microsoft Word' template
Order 'quasinumerical' categorical vectors (increasing order)
Age bar graph
Age and Gender bar graph
Bar graph
Grouped bar graph
Horizontal grouped bar graph
Horizontal bar graph
Pie chart
Seasonality line graph
Time series plot
Time series with 12-month moving average
Multiple time series plot
Previewing the PNG map
Shaping the final table (layout, title, color, font)
Capitalise first letter
Drafting an epidemiological report in 'Microsoft Word' format for a given disease, similar to the Annual Epidemiological Reports published by the European Centre for Disease Prevention and Control. Through standalone functions, it is specifically designed to generate each disease specific output presented in these reports and includes: - Table with the distribution of cases by Member State over the last five years; - Seasonality plot with the distribution of cases at the European Union / European Economic Area level, by month, over the past five years; - Trend plot with the trend and number of cases at the European Union / European Economic Area level, by month, over the past five years; - Age and gender bar graph with the distribution of cases at the European Union / European Economic Area level. Two types of datasets can be used: - The default dataset of dengue 2015-2019 data; - Any dataset specified as described in the vignette.