Stable Isotope Bayesian Ellipses in R
Adds an ellipse around some data to an existing plot
Plot the pairwise distances and angles describing the difference betwe...
Calculate Layman metrics on Bayesian posterior samples of a community
Calculate the overlap between two ellipses based on their posterior di...
Calculate the point estimates of the Layman metrics for each community
Read in SIBER format data and generate the SIBER object
Back-transform a z-score siber ellipse to original location and scale.
Test whether a set of points are inside or outside a defined circle
Apply a normalisation transformation to vectors of data onto ellipsoid...
Extract posterior means from call to siberMVN
Fit a multivariate normal distribution to x and y data using jags
Create a sequence of points on a circle
A utility function to simulate a single community comprised of groups
A utility function to simulate isotope data for several communities
A utility function to simulate a single group of data
Calculate maximum likelihood based measures of dispersion of bivariate...
Calculate the area of a convex hull given its coordinates
KAPOW!
Calculates the 6 Layman metrics on a vector of x and y data
Calculate the overlap between two ellipses based on the maximum likeli...
Adds convex hulls to each community to an existing plot
Adds ellipses to an existing plot for each of your groups
Plots illustrative convex hulls for each group within all communities
Creates an isotope scatterplot and provides a wrapper to ellipse and h...
Test whether a set of points are inside or outside a defined ellipse
Calculate the SEA based on a posterior distribution of Sigma
SIBER: Stable Isotope Bayesian Ellipses in R
Calculate the polar form of the vector between pairs of ellipse centro...
Calculate metrics and plotting information for convex hulls
Plot credible intervals as shaded boxplots using hdr.boxplot
Calculate the Bayesian Standard Ellipse Area for all groups
Calculates the boundary of a union of ellipses
Fit Bayesian bivariate normal distributions to each group in each comm...
Calculate metrics corresponding to the Standard Ellipse based on a cov...
Calculate the pairwise distances and angles describing the difference ...
Fits bi-variate ellipses to stable isotope data using Bayesian inference with the aim being to describe and compare their isotopic niche.