Community Assembly by Traits: Individuals and Beyond
Internal function. Transform abundance data matrix into individual lik...
Transform index results in a list of index
Auxiliary functions
Computing metrics to test and quantify the non-random assembly of comm...
Computing multitraits metrics to test and quantify the non-random asse...
Coefficient of variation, mean, minimum and standard deviation of the ...
Variance partitioning for multiple traits
Functional richness, evenness and divergence following Villeger et al....
Apply metrics to groups.
Ratio of the shortest distance to the longest distance in a minimum sp...
Variance partitioning accross nested scales
Plot community assembly index
Plot the bivariate relationships between T-statistics
Plot function to represent density of trait values
Plot result of observed indices values against null distribution
Plot SES values against a variable
Plot populations values against species values
Plot populations values against species values
Calcul of p-value for object of class Tstats, ComIndex, ComIndexMulti ...
Toy model to simulate internal and/or external filtering
Alpha, gamma and beta-components for taxonomic, functional and phyloge...
Sampling subset of data.
Standardized effect size for a list of index.
Standardized effect size and confidence interval for a matrix of stati...
Sum of branch length of a classification dendrogram (Petchey and Gasto...
Variance decomposition for a given trait used in decompCTRE
Computing observed T-statistics (T for Traits) and null expectations.
Detect and quantify community assembly processes using trait values of individuals or populations, the T-statistics and other metrics, and dedicated null models.