Calculating Likelihoods by Pedigree Paring
clipp: Calculate Likelihoods by Pedigree Paring
Combine the genotype frequencies and transition matrices of two geneti...
Calculate genotype frequencies from allele frequencies using Hardy-Wei...
Calculate phased genotype frequencies from allele frequencies, assumin...
Genotype frequencies for the hypergeometric polygenic model
Calculate genotype probabilities for a target person
Calculate the log-likelihoods of pedigrees
The transmission matrix for a single genetic locus
The transmission matrix for phased genotypes
The transmission matrix for the hypergeometric polygenic model
A fast and general implementation of the Elston-Stewart algorithm that can calculate the likelihoods of large and complex pedigrees. References for the Elston-Stewart algorithm are Elston & Stewart (1971) <doi:10.1159/000152448>, Lange & Elston (1975) <doi:10.1159/000152714> and Cannings et al. (1978) <doi:10.2307/1426718>.