ggalign1.2.0 package

Plot Adding Context Settings

Plot dendrogram tree

Group and align observations based on a group vector

Reorder or Group observations based on hierarchical clustering

Split observations by k-means clustering groups.

Order observations based on weights

Reorders layout observations based on specific statistics.

Create ggplot object with layout panel data

Plot Phylogenetics tree

Create a New CraftBox Object with CraftAlign craftsman

Arrange multiple plots into a grid

Define the plotting areas

Convert Object into a Grob

Convert Object into a Grob

Convert Object into a Grob

Convert Object into a Grob

Convert Object into a Grob

Convert Object into a Grob

Convert Object into a Grob

Convert Object into a Grob

Convert Object into a Grob

Convert Object into a Grob

Convert Object into a Grob

Convert Object into a Grob

Convert Object into a Grob

Create a Circular Layout for Genomic Data

Arrange plots in a circular layout

Determine the active context of circle layout

Set continuous limits for the layout

Polar Coordinates with Enhanced Controls

Craftsman Object for Layout Management

Add a plot to connect selected observations

Add a plot to annotate observations

Reset layout ordering and panel group

Define the links to connect a pair of observations

Define the links to connect the marked observations

Key glyphs for legends

Apply a function to the fields of an element object

Polar coordinates with Facet support

Build a data frame

Build a data frame

Build a data frame

Build a data frame

Build a data frame

Build a data frame

Build a data frame

Build a Matrix

Build a matrix from a maftools object

Build a Matrix for UpSet plot

Build a Matrix for OncoPrint

Build a Matrix for OncoPrint

Build a Matrix for UpSet plot

Build a matrix

Build a Matrix

Free from alignment

Calculate Genomic Region Density

Calculate inter-region distances for genomic rainfall plots

Layer with Grid or Function

Layer with a customized shape graphic using grid functions.

Draw images as point shapes using magick

Pie charts

Add z-aesthetic for geom_tile

Subdivide Rectangles

Get Data from the Attribute Attached by ggalign

Attach supplementary data and levels for ggalign

Get the statistics from the layout

ggalign: A 'ggplot2' Extension for Composable Visualization

Add ggplot by Aligning discrete or continuous variable

Generate a plot grob.

Connect two layout crosswise

Add ggplot to layout without alignment

Add a plot to annotate selected observations

Create an OncoPrint

Create an UpSet plot

Wrap Arbitrary Graphics to ggplot

Generate Tree Structures with Hierarchical Clustering

Create a heatmap

Create a ggplot inset

Reports whether x is layout object

Change the layer adding order

Add layout annotation

Define the grid to compose plots in

Set Expansion for the Layout

Control Plot Tagging in Layouts

Modify theme of the layout

Annotate the whole layout

Layout operator

Subset a Layout object

A Layout object

Define the links to connect a pair of observations

Link the paired observations with a line

Link the paired observations with a quadrilateral

Rasterize a grob object with magick

Define the links to connect the marked observations

Link the observations and the panel with a line

Link the observations and the panel with a quadrilateral

Link the observations and the panel with a triangle

Sort matrix for better visualization

Change the shape of the input object

Remove scale expansion

Ordering Permutation

Helper function to create pairs of observation groups

Add patch titles to plot borders

Get Patch representation

Apply a Scheme to a plot

Add an aligned cytoband ideogram plot

Determine the Active Context of Quad-Layout

Initialize Quad-Layout Annotation

Arrange plots in the quad-side of a main plot

Modify operated Context in quad_layout()

Determine the Active Context of Quad-Layout

Rasterize the ggplot layers

Read Example Data

Objects exported from other packages

Scale for gshape aesthetic

z scales

Align Specifications in the Layout

Plot data Specifications

Inherit a scheme from a parent

Initialize a scheme object

Plot default theme

Update the scheme

Abstract Scheme Class

A container for multiple layout schemes

Arrange plots crosswise horizontally or vertically

Create a stack Layout for Genomic Data

Arrange plots horizontally or vertically

Determine the active context of stack layout

Standardized gtable Representation

Remove axis elements

Convert the shape of a list for fortify method

Convert the shape of a MAF for fortify method

Convert the shape of a matrix for fortify method

Change the shape of the input object

Create ggplot object with layout panel data