'REST' 'API' Client for the 'NHGRI'-'EBI' 'GWAS' Catalog
Adds an element named <obj_type> to content sub-element.
Extract allele names from strings of the form rs123-G
Creates an ancestral groups table.
Creates an ancestries table.
Map an association id to a study id
Map an association id to an EFO trait id
Map an association id to a variant id
Drop any NA associations.
Creates an associations table.
An S4 class to represent a set of GWAS Catalog associations
Constructor for the S4 associations object.
Bind GWAS Catalog objects
Get all child terms of this trait in the EFO hierarchy
Does a string contain a question mark?
Creates a countries table.
Convert a cytogenetic band string to genomic coordinates.
Converts an empty vector to a scalar NA
Creates an Ensembl gene identifiers' table.
Creates an Entrez gene identifiers' table.
Grows vectors to match longest vector
Check if a variant exists in the Catalog.
Extract association identifiers from URLs
Filter GWAS Catalog objects by identifier.
Filter variants by standard human chromosomes.
gwasrapidd entities' examples
Get a GWAS Catalog resource
Request a paginated GWAS Catalog REST API endpoint
Request a GWAS Catalog REST API endpoint
Creates a genomic contexts table.
Creates a genotyping technologies table.
Get all GWAS Catalog associations
Get GWAS Catalog associations by their association identifiers
Get GWAS Catalog associations by EFO identifier
Get GWAS Catalog associations by EFO traits
Get GWAS Catalog associations by PubMed identifiers
Get GWAS Catalog associations by study identifiers
Get GWAS Catalog associations by variant identifiers
Get GWAS Catalog associations
Get all child terms of this trait in the EFO hierarchy
Get GWAS Catalog metadata
Get all GWAS Catalog studies
Get GWAS Catalog studies by association identifiers
Get GWAS Catalog studies by EFO identifier
Get GWAS Catalog studies by EFO traits
Get GWAS Catalog studies by EFO URIs
Get GWAS Catalog studies by full summary statistics criterion
Get GWAS Catalog studies by PubMed identifiers
Get GWAS Catalog studies by reported traits
Get GWAS Catalog studies by study identifiers
Get GWAS Catalog studies that have been requested by users or not
Get GWAS Catalog studies by variant identifiers
Get GWAS Catalog studies
Get all GWAS Catalog EFO traits
Get GWAS Catalog traits by association identifiers
Get GWAS Catalog traits by EFO identifier
Get GWAS Catalog traits by EFO traits
Get GWAS Catalog traits by EFO URIs
Get GWAS Catalog traits by PubMed identifiers
Get GWAS Catalog traits by study identifiers
Get GWAS Catalog EFO traits
Get all GWAS Catalog variants
Get GWAS Catalog variants by their association identifiers
Get GWAS Catalog variants by cytogenetic band.
Get GWAS Catalog studies by EFO identifier
Get GWAS Catalog variants by EFO traits
Get GWAS Catalog variants by gene name.
Get GWAS Catalog variants by genomic range
Get GWAS Catalog variants by PubMed identifiers
Get GWAS Catalog variants by reported traits
Get GWAS Catalog variants by study identifiers
Get GWAS Catalog variants by variant identifiers
Get GWAS Catalog variants
gwasrapidd: 'REST' 'API' Client for the 'NHGRI'-'EBI' 'GWAS' Catalog
Is a string a GWAS Catalog association accession ID?
Is the GWAS Catalog REST API server reachable?
Is a string an EFO trait ID?
Is a string an EFO trait ID in the broad sense?
Is the GWAS response wrapped in an '_embedded' object?
Is string empty or an all whitespace string?
Is a string a human chromosome name?
Is the GWAS response paginated?
Is a string a PubMed ID?
Is a string a valid rsID?
Is a string a GWAS Catalog study accession ID?
Convert a named list to an S4 object
Creates a loci table.
Joins for lists.
Generate a list to hold GWAS metadata
Recursively map all missing values to NA.
Number of GWAS Catalog entities
Normalise a JSON-list.
Identify the GWAS object entity from the URL endpoint
Browse dbSNP from SNP identifiers.
Browse GTEx from SNP identifiers.
Browse GWAS Catalog entities from the GWAS Web Graphical User Interfac...
Browse PubMed from PubMed identifiers.
Peels off the _embedded tier from a JSON-list.
Pipe operator
Creates a platforms table.
Creates a publications table.
Simple rapply version that deals with NULL values.
Creates an authors' reported genes table.
Creates a risk alleles table.
Convert an S4 object into a list
Setup the environment to skip slow tests
Setup the environment to still run slow tests
Set operations on GWAS Catalog objects.
Skips a test if TEST_FAST is 'true'
Drop any NA studies.
Creates a studies table.
An S4 class to represent a set of GWAS Catalog studies
Constructor for the S4 studies object.
Map a study id to an association id
Map a study id to a EFO trait id
Map a study id to a variant id
Subset an associations object
Subset a studies object
Subset a traits object
Subset a variants object
Are you sure?
Map an EFO trait id to an association id
Map an EFO trait id to a study id
Map an EFO trait id to a variant id
Drop any NA traits.
Creates a traits tibble
An S4 class to represent a set of GWAS Catalog EFO traits.
Constructor for the S4 traits object.
Trim whitespace.
Creates a gene Ensembl identifiers table.
Creates a gene Entrez identifiers table.
Extract variant identifiers from strings of the form rs123-G
Map a variant id to an association id
Map a variant id to a study id
Map a variant id to an EFO trait
Drop any NA variants.
Creates a variants table.
An S4 class to represent a set of GWAS Catalog variants
Constructor for the S4 variants object.
Export a GWAS Catalog object to xlsx
'GWAS' R 'API' Data Download. This package provides easy access to the 'NHGRI'-'EBI' 'GWAS' Catalog data by accessing the 'REST' 'API' <https://www.ebi.ac.uk/gwas/rest/docs/api/>.
Useful links