threeBrain1.2.0 package

R6 Class - Abstract Class of Geometries

A geometry that renders nothing

Shiny Proxy for Viewer

Setup Package, Install Environment

Calculate rotation matrix from non-zero vectors

Function to check whether FreeSurfer folder has everything we need

Conform imaging data in 'FreeSurfer' way

Create a geometry group containing multiple geometries

Calculate cross-product of two vectors in '3D'

R6 Class - Generate Data Cube Geometry

R6 Class - Generate Data Cube Geometry via 3D Volume Texture

Default Directory to Store Template Brain

R6 Class - Generate Geometry from Vertices and Face Indices

Read FreeSurfer surface and volume files

Query the 'FreeSurfer' labels

Generate smooth envelope around surface

Approximate 'sub-cortical' surfaces from 'parcellation'

Creates any mesh geometry given vertices and face indices

Create sphere geometry

R6 Class - Generate Group of Geometries

Function to read digest header

Get 'voxel' to world matrix

Import from FreeSurfer and create JSON cache for 3D viewer

Import 'FreeSurfer' or 'SUMA' files into the viewer structure

R6 Class - Generate Line Segments

List or load all electrode prototypes

Launch a 'shiny' application to localize electrodes

Create Multi-subject Template

Create or load new electrode prototype from existing configurations

Plot slices of volume

Read FreeSurfer ascii file

Read FreeSurfer Annotations

Read FreeSurfer m3z file

Read FreeSurfer mgz/mgh file

Function to load surface data from Gifti files

Function to load FreeSurfer mgz/mgh file

Read volume file in 'MGH' or 'Nifti' formats

Objects exported from other packages

Shiny Renderer for threeBrain Widgets

Function to reshape data to RAS order

Save threeBrain widgets to local file system

Create 'sEEG' shaft geometry prototype

R6 Class - Generate Sphere Geometry

R6 Class - Generate Sphere Geometry

Download and Manage Template Subjects

Create a brain object

Create a Threejs Brain and View it in Browsers

Shiny Output for threeBrain Widgets

R6 Class - Generate Tube Geometry

Add video content to the viewer

Generate surface file from 'nii' or 'mgz' volume files

Color maps for volume or surface data

Generate volume data from 'MNI' coordinates