Standardized Processing and Analysis of Thermal Imaging Data in Animal Studies
Aggregate Technical Replicates for Statistical Rigor
Calculate Comprehensive Thermal Statistics
Convert BioThermR Object to EBImage Object
BioThermR: Standardized Processing and Analysis of Thermal Imaging Dat...
Compile Batch Statistics into a Tidy Data Frame
Create BioThermR Object from Data
Import EBImage Object into BioThermR
Load BioThermR Data from Disk
Merge Thermal Stats with Clinical Data
Visualize ROI Overlap and Dice Coefficient
Interactive 3D Thermal Surface Plot
Generate a "Thermal Cloud" Visualization (Phyllotaxis Layout)
Visualize Temperature Distribution (Density Plot)
Visualize Thermal Matrix as 2D Heatmap
Create a Gap-Free Thermal Image Montage
Batch Read .raw Files
Read FLIR Radiometric JPG File
Read a Single .raw Thermal Image File
Interactive ROI Selector with Denoising (Shiny App)
Filter Thermal Image by Temperature Thresholds
Automated ROI Segmentation via EBImage
Save BioThermR Data Objects to Disk
Generate Publication-Ready Comparative Barplots
Generate Publication-Ready Comparative Boxplots
Create a Thermal Image Montage
A modular framework for standardized analysis of thermal imaging data in animal experimentation. The package integrates thermographic data import (FLIR, raw, CSV), automated region of interest (ROI) segmentation based on 'EBImage' (Pau et al., 2010 <doi:10.1093/bioinformatics/btq046>), interactive ROI refinement, and high-throughput batch processing.
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