Identify Relevant Clinical Codes and Evaluate Their Use
Add concepts to a codelist
Helper for consistent documentation of ageGroup.
Coerce to a codelist
Coerce to a codelist with details
Coerce to a concept set expression
Get the concept classes associated with a codelist
Get the domains associated with a codelist
Get the dose forms associated with drug concepts in a codelist
Get available dose units
Get the names of drug ingredients associated with codelist
Get available relationships with concepts in a codelist
Get drug routes associated with a codelist
Get the vocabularies associated with a codelist
Get the names of all available Anatomical Therapeutic Chemical (ATC) c...
Get the available concept classes used in a given set of domains
Get the domains available in the cdm
Get the dose forms for drug concepts
Get available dose units
Get the names of all available drug ingredients
Get available relationships between concepts
Get available drug routes
Get the available vocabularies available in the cdm
Run benchmark of codelistGenerator analyses
Helper for consistent documentation of byConcept.
Helper for consistent documentation of bySex.
Helper for consistent documentation of byYear.
Helper for consistent documentation of cdm.
CodelistGenerator: Identify Relevant Clinical Codes and Evaluate Their...
Helper for consistent documentation of codelistNameDoc
Get concept ids from JSON files containing cohort definitions
Get concept ids from JSON files containing concept sets
Compare overlap between two sets of codes
Helper for consistent documentation of countBy.
Helper for consistent documentation of domain.
Helper for consistent documentation of doseForm.
Helper for consistent documentation of doseUnit.
Helper for consistent documentation of .options.
Exclude concepts from a codelist
Get the descendant codes of Anatomical Therapeutic Chemical (ATC) clas...
Perform a systematic search to identify a candidate codelist using the...
Get descendant codes for a given concept
Get descendant codes of drug ingredients
Show mappings from non-standard vocabularies to standard.
Helper for consistent documentation of groupColumn.
Helper for consistent documentation of groupColumn.
Helper for consistent documentation of header.
Helper for consistent documentation of header.
Helper for consistent documentation of hide.
Helper for consistent documentation of hide.
Helper for consistent documentation of includeDescendants.
Helper for consistent documentation of ingredientRange.
Generate a codelist from the intersection of different codelists. The ...
Helper for consistent documentation of keepOriginal.
Helper for consistent documentation of keepOriginal.
Helper for consistent documentation of level.
Helper for consistent documentation of level.
Helper for consistent documentation of minimumCount.
Generate example vocabulary database
Helper for consistent documentation of nameStyle.
Objects exported from other packages
Helper for consistent documentation of routeCategory.
Report the search strategy used to identify codes when using the `getC...
Helper for consistent documentation of standardConcept.
Stratify a codelist by brand category.
Stratify a codelist by the concepts included within it.
Stratify a codelist by domain category.
Stratify a codelist by dose form.
Stratify a codelist by dose unit.
Stratify a codelist by route category.
Subset a codelist to only those codes from a particular domain.
Subset a codelist to only those codes from a particular domain.
Subset a codelist to only those codes from a particular domain.
Subset a codelist to only those with a particular dose unit.
Subset a codelist to only those codes with a range of number of ingred...
Subset a codelist to only those with a particular route category
Subset a codelist to only those codes from a particular vocabulary.
Filter a codelist to keep only the codes being used in patient records
Summarise code use from achilles counts.
Summarise code use in patient-level data.
Summarise code use among a cohort in the cdm reference
Find orphan codes related to a codelist using achilles counts and, if ...
Format the result of summariseAchillesCodeUse into a table
Format the result of summariseCodeUse into a table.
Format the result of summariseCohortCodeUse into a table.
Helper for consistent documentation of table.
Format the result of summariseOrphanCodes into a table
Helper for consistent documentation of style.
Helper for consistent documentation of type.
Helper for consistent documentation of type.
Helper for consistent documentation of type.
Generate a codelist from the union of different codelists. The generat...
Get the available version of the vocabulary used in the cdm
Helper for consistent documentation of x.
Helper for consistent documentation of x where input can be codelist...
Generate a candidate code list for the Observational Medical Outcomes Partnership (OMOP) common data model based on string matching. For a given search strategy, a candidate code list will be returned.