DImodelsVis1.0.3 package

Visualising and Interpreting Statistical Models Fit to Compositional Data

add_add_var

Add additional variables to the data

add_ID_terms

Add identity effect groups used in a Diversity-Interactions (DI) model...

add_interaction_terms

Add interaction terms used in a Diversity-Interactions (DI) model to n...

add_prediction

Add predictions and confidence interval to data using either a model o...

conditional_ternary

Conditional ternary diagrams

conditional_ternary_data

Conditional ternary diagrams

conditional_ternary_plot

Conditional ternary diagrams

copy_attributes

Copy attributes from one object to another

custom_filter

Special custom filtering for compositional data

DImodelsVis-package

DImodelsVis: Model interpretation and visualisation for compositional ...

get_colours

Return colour-blind friendly colours

get_equi_comms

Get all equi-proportional communities at specific levels of richness

get_shades

Returns shades of colours

gradient_change

Visualise change in (predicted) response over diversity gradient

gradient_change_data

Calculate change in predicted response over diversity gradient

gradient_change_plot

Visualise change in (predicted) response over diversity gradient

group_prop

Combine variable proportions into groups

grouped_ternary

Conditional ternary diagrams at functional group level

grouped_ternary_data

Grouped ternary diagrams

grouped_ternary_plot

Conditional ternary diagrams at functional group level

model_diagnostics

Regression diagnostics plots with pie-glyphs

model_selection

Visualising model selection

prediction_contributions

Model term contributions to predicted response

prediction_contributions_data

Model term contributions to predicted response

prediction_contributions_plot

Visualise model term contributions to predicted response

simplex_path

Visualising the change in a response variable between two points in th...

simplex_path_data

Creating data for visualising the change in a response variable betwee...

simplex_path_plot

Visualising the change in a response variable between two points in th...

Simplex_projection

Project 3-d compositional data onto x-y plane and vice versa

ternary_data

Prepare data for showing contours in ternary diagrams.

ternary_plot

Ternary diagrams

theme_DI

Default theme for DImodelsVis

visualise_effects

Effects plot for compositional data

visualise_effects_data

Prepare data for effects plots for compositional data

visualise_effects_plot

Effects plot for compositional data

Statistical models fit to compositional data are often difficult to interpret due to the sum to 1 constraint on data variables. 'DImodelsVis' provides novel visualisations tools to aid with the interpretation of models fit to compositional data. All visualisations in the package are created using the 'ggplot2' plotting framework and can be extended like every other 'ggplot' object.