DImodelsVis1.0.4 package

Visualising and Interpreting Statistical Models Fit to Compositional Data

add_add_var

Add additional variables to data via cartesian product

add_prediction

Add predictions and uncertainty interval to data using either a model ...

conditional_ternary_data

Data preparation for conditional ternary diagrams

conditional_ternary_plot

Conditional ternary diagrams

conditional_ternary

DI specific wrapper for conditional ternary diagrams

copy_attributes

Copy attributes from one object to another

custom_filter

Special custom filtering for compositional data

DI_ID_and_ints

Add identity and interaction terms used in a Diversity-Interactions (D...

DImodelsVis-package

DImodelsVis: Model interpretation and visualisation for compositional ...

get_colours

Return colour-blind friendly colours

get_equi_comms

Get all equi-proportional communities at specific levels of richness

get_shades

Returns shades of colours

gradient_change_data

Data preparation for visualising change in response over diversity gra...

gradient_change_plot

Visualise change in response over diversity gradient

gradient_change

DI specific wrapper for visualising change in response over diversity ...

group_prop

Combine variable proportions into groups

grouped_ternary_data

Prepare data for grouped ternary diagrams

grouped_ternary_plot

Grouped ternary diagrams

grouped_ternary

DI specific wrapper for grouped ternary diagrams

model_diagnostics_data

Data preparation of diagnostics plots for regression models with compo...

model_diagnostics_plot

Diagnostics plots for regression models with compositional predictors

model_diagnostics

DI specific wrapper of diagnostics plots for regression models with co...

model_selection_data

Prepare data for visualising model selection

model_selection_plot

Visualise model selection

model_selection

DI specific wrapper for visualising model selection

prediction_contributions_data

Model term contributions to predicted response

prediction_contributions_plot

Visualise model term contributions to predicted response

prediction_contributions

Model term contributions to predicted response

simplex_path_data

Prepare data for visualising change in response across points in the s...

simplex_path_plot

Visualising change in response across points in the simplex space

simplex_path

DI specific for visualising change in response across points in the si...

Simplex_projection

Project 3-d compositional data onto x-y plane and vice versa

ternary_data

Prepare data for showing contours in ternary diagrams.

ternary_plot

Ternary diagrams

theme_DI

Default theme for DImodelsVis

visualise_effects_data

Prepare data for effects plots of compositional predictors

visualise_effects_plot

Effects plot for compositional predictors

visualise_effects

DI specific wrapper of effects plot for compositional variables

Statistical models fit to compositional data are often difficult to interpret due to the sum to 1 constraint on data variables. 'DImodelsVis' provides novel visualisations tools to aid with the interpretation of models fit to compositional data. All visualisations in the package are created using the 'ggplot2' plotting framework and can be extended like every other 'ggplot' object.