Simulation, Visualization and Comparison of Tumor Evolution Data
Create tumor phylogenetic tree topology
Calculate the variant allele frequency (VAF) values in a set of sample...
Create a Phylotree object from a B matrix.
Get consensus tree between two phylogenetic trees
S4 class to represent phylogenetic trees.
Add noise to the VAF values in an F matrix
Create a tumor phylogenetic tree instance
Create a Phylotree object
Calculate tumor clone frequencies in samples
Check if two phylogenetic trees are equal
Find the set of common subtrees between two phylogenetic trees
Plot a phylogenetic tree with proportional node sizes and colors
Plot a Phylotree object.
Simulating, visualizing and comparing tumor clonal data by using simple commands. This aims at providing a tool to help researchers to easily simulate tumor data and analyze the results of their approaches for studying the composition and the evolutionary history of tumors.