isotracer1.1.8 package

Add fixed effects of one or several covariates to some parameters.

Register a pulse event on one of the compartment of a topology

Generic for as_tbl_graph()

Convert a network topology to a tbl_graph

Convert a tidy_flows object to an mcmc.list

Convert a tidy_steady_states object to an mcmc.list

List the available priors for model parameters

Combine mcmc.list objects

Calculate steady-state compartment sizes for a network

Return the compartments of a network model

Define a fixed-value prior

Convert delta notation to proportion of heavy isotope

Calculate DIC from a model output

Define an exponential prior

Filter a tibble based on the "group" column

Filter method for output of tidy_data_and_posterior_predict()

Filter (alias for filter function from dplyr)

Pretty formatting of a prior_tibble object

Pretty formatting of a prior object

Define a gamma prior

A quick-and-dirty way of visualizing relative flows in a network

Plot a network topology

Plot a topology

Plot a topology

Get the grouping for a networkModel object

Define a half-Cauchy prior (on [0;+Inf])

The 'isotracer' package

Math generics for mcmc.list objects

Draw a heatmap based on the correlations between parameters

Get a table with parameters which are missing priors

Create an empty network model

Define a truncated normal prior (on [0;+Inf])

Function used for displaying prior object in tibbles

Ops generics for mcmc.list objects

Implementation of the '==' operator for priors

Ops generics for topology objects

Return the parameters of a network model

Function used for displaying prior object in tibbles

Plot observations/trajectories/predictions from a network model

Plot output from split_to_unit_plot

Draw from the posterior predictive distribution of the model outcome

Draw from the posterior predictive distribution of the model outcome

Add a column with predictions from a fit

Print method for networkModel objects

Pretty printing of a prior_tibble object

Pretty printing of a prior object

Pretty printing of a topology object

Return the tibble containing the priors of a networkModel

Calculate the trajectories of a network model

Return the distribution family for observed proportions

Convert isotopic proportions to delta values

Draw a Sankey plot with basic defaults

Objects exported from other packages

Run a MCMC sampler on a network model using Stan

Sample from a prior object

Generate samples from a network model

Sample parameter values from priors

Draw a Sankey plot for a network and estimated flows

Define a beta prior (on [0;scale])

Select parameters based on their names

Set the half-life for radioactive tracers

Set initial conditions in a network model

Set observations in a network model

Set the parameters in a network model

Set prior(s) for a network model

Set the distribution family for observed proportions

Set the distribution family for observed sizes

Flag some network compartments as being split compartments

Flag some network compartments as being in a steady state

Set the topology in a network model.

Return the distribution family for observed sizes

Convert a Stanfit object to a nicely named mcmc.list object

Subset method for networkModelStanfit objects

Extract data from a networkModel object into a tidy tibble.

Prepare tidy data and posterior predictions

Build a tidy table with the flows for each iteration

Extract a tidy output from an mcmc.list

Draw from the posterior predictive distribution of the model outcome

Build a tidy table with the calculated steady states for each iteratio...

Build a tidy table with the trajectories for each iteration

Return the list of topologies, or a unique topology if all identical

Plot mcmc.list objects

Function used for displaying prior object in tibbles

Define a uniform prior