NeuroAnatomy Toolbox ('nat') Extension for Assessing Neuron Similarity and Clustering
Calculate distances and dot products between two sets of neurons
Calculate probability matrix from distances and dot products between n...
Calculate scoring matrix from probability matrices for matching and no...
Create a scoring matrix given matching and non-matching sets of neuron...
Extract diagonal terms from a variety of matrix types
Extract parts of a sparse spam matrix
Add one or more submatrices to a sparse score matrix
Add forwards, reverse and self scores for a pair of neurons to a spars...
Neuron similarity, search and clustering tools
Wrapper function to compute all by all NBLAST scores for a set of neur...
Calculate similarity score for neuron morphologies
Produce similarity score for neuron morphologies
Utility function to generate all or random pairs of neurons
Cluster a set of neurons
Methods to identify and plot groups of neurons cut from an hclustobj...
Display two neurons with segments in the query coloured by similarity
Convert a subset of a square score matrix to a sparse representation
Convert (a subset of) a raw score matrix to a distance matrix
Return scores (or distances) for given query and target neurons
Return the labels of items in 1 or more groups cut from hclust object
Compute point & tangent vector similarity score between two linesets
Extends package 'nat' (NeuroAnatomy Toolbox) by providing a collection of NBLAST-related functions for neuronal morphology comparison (Costa et al. (2016) <doi: 10.1016/j.neuron.2016.06.012>).
Useful links