ribiosUtils1.7.7 package

Testing whether several objects are all identical with each other

Apply isTopOrIncAndNotExcl filter to a matrix

Convert string-valued data frame or matrix into a numeric matrix

Assert whether the required column names exist

Check dimensionality of contrast matrix

Check dimensionality of design matrix

Check dimensionality of both design and contrast matrix

Print BEDA project information

Translate BiOmics-Pathology pstore path to URL

Set boundaries for numeric values, or perform a 0-1 normalization.

Column bind by rownames

Check whether file(s) exist

Print the chosen few items of a long vector

Close connections to all loggers This function closes all open connect...

Pairwise jaccard/overlap coefficient can be calculated efficiently usi...

Compare two vectors by set operations

Calculate correlation coefficients using common rows of the two matric...

Count tokens by splitting strings

Create a directory if it does not exist, and then make sure the creati...

Cumulative Jaccard Index

Cumulative overlap coefficient

Proportion of cumulative sum over sum

Cut a vector of numbers into interval factors.

Cut a tree into groups of ordered sizes

Get a factor vector for a data.frame

Convert factor columns in a data.frame into character strings

Format labels for wells in microwell plates to equal widths

Get the base and extension(s) of file name(s)

Make the first alphabet of strings uppercase

Shorten strings to strings with a fix width of characters

Ensure the Truth of R Expressions and Print Defined Error Message if N...

head/tail function for matrix or data.frame

Print head and tail elements of a vector

Test whether two matrices are identical by values and by dim names

Test whether two matrices have the same numerica values given certain ...

Case-insensitive match and pmatch

Invert the names and elements of a list

Checks existing directory

Tell whether an object is an error

Whether an integer is odd (or even)

Tell whether a character string is a Roche compound ID

Logical vector of being top or included and not excluded

Calculate the Jaccard Index between two vectors

KEEP ROWS WITH THE MAXIMUM STATISTIC

Return last characters from strings

Load a library mutedly and quit (die) in case of failing

Transform a list of character strings into a data.frame

Pairwise overlap coefficient of lists

Convert a long-format data frame into matrix

Match a column in data.frame to a master vector

Match a given vector to column names of a data.frame or matrix

Transform a matrix into a long-format data.frame

Merge infrequent levels by setting the threshold of the proportion of ...

Multiple identical

Multiple matching

Operations for multiple sets

Replace NA with FALSE

Calculate pairwise distances between each pair of items in a list

Ordered factor

Reorder the groups by their group size

Overlap coefficient, also known as Szymkiewicz-Simpson coefficient

Overwrite a directory

Transform p-values to continuous scores with the absolute-log10 transf...

Calculate pairwise Jaccard Indices between each pair of items in a lis...

Calculate pairwise overlap coefficients between each pair of items in ...

Print a decimal number in procent format

Transform p-values to continuous scores with the quantile function of ...

Print BEDAinfo object

Transform p-values to continuous scores

Rearrange columns to put some columns to far left

Decode password with function implemented with pwencode

Encode a password

Quitely Quit with Messages

Quietly runs a system command

Sort numeric factor levels by values

The functions registerLog and doLog provide a simple mechanism to ...

Relevel a factor by a named or unnamed vector.

Relevel a factor by a named vector.

Relevel a factor by a unnamed vector.

Reload a package

Remove columns

Remove rows or column by function

Remove columns in a matrix that contains one or more NAs

Remove invariable columns from a data frame or matrix

Remove rows in a matrix that contains one or more NAs

Replace column names in data.frame

Replace p-values of zero

A temporary directory which (1) every machine in the cluster has acces...

A temporary file which (1) every machine in the cluster has access to ...

ribiosUtils: Utilities from and Interface to the 'Bioinfo-C' ('BIOS') ...

ribiosUtils

Remove temporary files at a specified time interval from now

Extract core identifiers from Roche compound IDs

Scale a matrix by row

S3 method for row-scaling

Scale a table by row

Get reverse rank orders in each column

Reverse rank order

Return a matrix that highlights reverse rank orders of features of int...

Reverse setdiff

Prepare R for an interactive script

Functions for command-line Rscript debugging

Shorten Roche compounds identifiers

Shorten strings to a given number of characters

Keep silent by suppressing warnings and messages

Sort a numeric vector and filter by a threshold of cumsumprop

Sort data.frame rows by values in specified columns

Sort matrix by dim names

Tokenize strings by character

Repeat garbage-collecting until all resource is freed

Subset a data.frame by column name, allowing differences in cases

Summarizing rows/columns by a factor

Trim leading and tailing spaces from string

Length of unique elements in a vector

Make a vector free of NA and unique

Print messages conditional on the verbose level

Translate well index numbers to well positions

System user name

Write text as log to a connection