simDNAmixtures1.1.2 package

Stutter model where the expected stutter rate depends on the allele an...

Validate Allele Frequencies

Validate Pedigree Object

Defines a (semi-continuous) drop model

Defines a gamma model for peak height variability

Stutters and size regressions for a GlobalFiler 3500 kit

Global stutter model where the expected stutter rate is constant acros...

Defines a log normal model for peak height variability

Read allele frequencies in FSIgen format (.csv)

Reads a size regression file

Read STRmix Kit Settings

Reads a stutter exceptions file with overrides for expected stutter ra...

Reads a stutter regression file

Read wide table (.txt) with Allele1, Allele2, ... columns as is

Sample genotypes for mixture contributors according to allele frequenc...

Sample drop model(s) with parameters according to priors

Sample gamma model(s) with parameters according to priors

Sample a genotype according to allele frequencies

Sample log normal model(s) with parameters according to priors

Sample log normal model parameters according to priors

Sample log normal stutter variance parameters according to priors

Sample Locus Specific Amplification Efficiency (LSAE) according to pri...

Sample (many) genotypes for pedigree members according to allele frequ...

Sample mixture profile with provided genotypes

Sample mixtures with known genotypes and fixed parameters

Sample mixtures with known genotypes and random parameters according t...

Sample mixtures with random genotypes and random parameters according ...

Sample offspring from two parental genotypes

Sample genotypes for pedigree according to allele frequencies by allel...

Converts SMASH (SampleName, Marker, Allele, Size, Height) data to a wi...

Defines a stutter type to be used in the allele specific stutter model...