A Tidy Implementation of Heatmap
add_annotation
Add attribute to abject
Add class to abject
annot_to_list
Adds a bar annotation layer to a InputHeatmap, that on evaluation cr...
Add group annotation strips to a tidyHeatmap
Adds a line annotation layer to a InputHeatmap, that on evaluation c...
Adds a numeric annotation layer to an InputHeatmap, that on evaluati...
Adds a point annotation layer to a InputHeatmap, that on evaluation ...
Adds a tile annotation layer to a InputHeatmap, that on evaluation c...
Creates a ComplexHeatmap object for less standard plot manipulation ...
Get matrix from tibble
Check whether there are duplicated genes/transcripts
Check whether there are NA counts
Remove class to abject
Check whether a numeric vector has been log transformed
Get column names either from user or from attributes
Get column names either from user or from attributes
Get column names either from user or from attributes
Get column names either from user or from attributes
Retrieve heatmap data and dendrograms as plotted
Get column names either from user or from attributes
Get column names either from user or from attributes
Get column names either from user or from attributes
get_x_y_annotation_columns
Creates a InputHeatmap object from tbl_df on evaluation creates a ...
This is a generalisation of ifelse that accepts an object and return a...
This is a generalisation of ifelse that accepts an object and return a...
input_heatmap
Adds a layers of symbols above the heatmap tiles to a InputHeatmap, ...
Adds a layers of symbols above the heatmap tiles to a InputHeatmap, ...
Adds a layer of symbols above the heatmap tiles to a InputHeatmap, t...
Adds a layers of symbols above the heatmap tiles to a InputHeatmap, ...
Adds a layers of symbols above the heatmap tiles to a InputHeatmap, ...
Adds a layers of symbols above the heatmap tiles to a InputHeatmap, ...
Adds a layer of symbols above the heatmap tiles to a InputHeatmap, t...
Adds a layers of texts above the heatmap tiles to a InputHeatmap, th...
.formula parser
Add two tidyHeatmap objects together
From rlang deprecated
Convert array of quosure (e.g. c(col_a, col_b)) into character vector
save_pdf
save_pdf
Save plot on PDF file
Scale counts in a robust way against sd == 0
Sub function of remove_redundancy_elements_though_reduced_dimensions
Split the heatmap row-wise depending on the biggest branches in the cl...
tidyHeatmap: A Tidy Implementation of Heatmap
Wrap tidyHeatmap (ComplexHeatmap) in a patchwork-compliant patch
This is a tidy implementation for heatmap. At the moment it is based on the (great) package 'ComplexHeatmap'. The goal of this package is to interface a tidy data frame with this powerful tool. Some of the advantages are: Row and/or columns colour annotations are easy to integrate just specifying one parameter (column names). Custom grouping of rows is easy to specify providing a grouped tbl. For example: df %>% group_by(...). Labels size adjusted by row and column total number. Default use of Brewer and Viridis palettes.
Useful links