CohortCharacteristics0.4.0 package

Summarise and Visualise Characteristics of Patients in the OMOP CDM

availablePlotColumns

Available columns to use in facet and colour arguments in plot fun...

availableTableColumns

Available columns to use in header, groupColumn and hide argumen...

benchmarkCohortCharacteristics

Benchmark the main functions of CohortCharacteristics package.

CohortCharacteristics-package

CohortCharacteristics: Summarise and Visualise Characteristics of Pati...

cohortDoc

Helper for consistent documentation of cohort.

cohortIdDoc

Helper for consistent documentation of cohortId.

mockCohortCharacteristics

It creates a mock database for testing CohortCharacteristics package

plotCharacteristics

Create a ggplot from the output of summariseCharacteristics.

plotCohortAttrition

create a ggplot from the output of summariseLargeScaleCharacteristics.

plotCohortCount

Plot the result of summariseCohortCount.

plotCohortOverlap

Plot the result of summariseCohortOverlap.

plotCohortTiming

Plot summariseCohortTiming results.

plotComparedLargeScaleCharacteristics

create a ggplot from the output of summariseLargeScaleCharacteristics.

plotDoc

Helper for consistent documentation of plot.

plotLargeScaleCharacteristics

create a ggplot from the output of summariseLargeScaleCharacteristics.

reexports

Objects exported from other packages

resultDoc

Helper for consistent documentation of result.

strataDoc

Helper for consistent documentation of strata.

summariseCharacteristics

Summarise characteristics of cohorts in a cohort table

summariseCohortAttrition

Summarise attrition associated with cohorts in a cohort table

summariseCohortCount

Summarise counts for cohorts in a cohort table

summariseCohortOverlap

Summarise overlap between cohorts in a cohort table

summariseCohortTiming

Summarise timing between entries into cohorts in a cohort table

summariseLargeScaleCharacteristics

This function is used to summarise the large scale characteristics of ...

tableCharacteristics

Format a summarise_characteristics object into a visual table.

tableCohortAttrition

Create a visual table from the output of summariseCohortAttrition.

tableCohortCount

Format a summarise_characteristics object into a visual table.

tableCohortOverlap

Format a summariseOverlapCohort result into a visual table.

tableCohortTiming

Format a summariseCohortTiming result into a visual table.

tableDoc

Helper for consistent documentation of table.

tableLargeScaleCharacteristics

Format a summarise_large_scale_characteristics object into a visual ta...

timeScaleDoc

Helper for consistent documentation of timeScale.

uniqueCombinationsDoc

Helper for consistent documentation of uniqueCombinations.

Summarise and visualise the characteristics of patients in data mapped to the Observational Medical Outcomes Partnership (OMOP) common data model (CDM).

  • Maintainer: Marti Catala
  • License: Apache License (>= 2)
  • Last published: 2024-11-26