End-to-End Marine Food Web Model
Calculate initial values of the scaling parameters for the fishing fle...
Box and whisker plots comparing annual or monthly observational data w...
Create tornado bar-plots of the differences between two model runs.
Box and whisker plots comparing annual or monthly outputs from single ...
Make a copy of a named model/variant and documentation in a user defin...
Extract the values of harvest ratios generated by the fleet model.
Extract the values of all the state variables at the end of a model ru...
Get documentation on the parameters in the model.
Get documentation on the model outputs available as the basis for sens...
List the available models in a designated workspace.
Combine two or more sets of raw output data from parallel sensitivity ...
Optimize StrathE2E fishing gear activity multipliers to maximumize the...
Optimize StrathE2E ecology model parameters to maximise the likelihood...
Optimize StrathE2E harvest ratio multipliers to maximum the likelihood...
Plot showing the annual annual average biomass densities of each guild...
Plot the distribution and composition of annual catches across guild, ...
Plot daily data on ecological outputs from the model over the final ye...
Plot climatological year of environmental driving data.
Plot shaded-grid-cell diagrams of the distributions of fishing-related...
Plot daily data on migration fluxes by actively mobile guilds during t...
Plot diagnostic data on the performance of parameter optimization func...
Plot diagnostic data from sensitivity and Monte Carlo analyses.
Plot showing the annual mean trophic level index, and the omnivory ind...
Plot ecology model state variables or fishery catches for the full dur...
Plot fishery yield curve data for planktivorous or demersal fish.
Post-process already-created data from sensitivity or Monte Carlo anal...
Read all the configuration, driving and parameter files for a designat...
Run the StrathE2E model with a given configuration.
Run a Monte Carlo simulation with StrathE2E and derive centiles of cre...
Perform a parameter sensitivity analysis on the StrathE2E model.
Run a set of models to generate fishery yield curve data for either pl...
StrathE2E2 Package
A dynamic model of the big-picture, whole ecosystem effects of hydrodynamics, temperature, nutrients, and fishing on continental shelf marine food webs. The package is described in: Heath, M.R., Speirs, D.C., Thurlbeck, I. and Wilson, R.J. (2020) <doi:10.1111/2041-210X.13510> StrathE2E2: An R package for modelling the dynamics of marine food webs and fisheries. 8pp.
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