A Unified Data Layer for Large-Scale Single-Cell, Spatial and Bulk Immunomics
Aggregates AIRR data into receptors
Aggregate AIRR data into repertoires
Annotate ImmunData object
Annotate a Seurat object from ImmunData (by barcode)
Count the number of chains in ImmunData
Filter ImmunData by receptor features, barcodes or any annotations
Convert an immunarch Object into an ImmunData Dataset
Get test datasets from immundata
Get test datasets from immundata
Internal Immundata Global Configuration
Get Immundata internal schema field names
immundata: A Unified Data Layer for Large-Scale Single-Cell, Spatial a...
ImmunData: A Unified Structure for Immune Receptor Repertoire Data
Create or validate a receptor schema object
Build a seq_options list for sequence‑based receptor filtering
Modify or Add Columns to ImmunData Annotations
Preprocessing and postprocessing of input immune repertoire files
Load a saved ImmunData from disk
Load and Validate Metadata Table for Immune Repertoire Files
Read and process immune repertoire files to immundata
Save ImmunData to disk
Provides a unified data layer for single-cell, spatial and bulk T-cell and B-cell immune receptor repertoire data. Think AnnData or SeuratObject, but for AIRR data, a.k.a. Adaptive Immune Receptor Repertoire, VDJ-seq, RepSeq, or VDJ sequencing data.
Useful links