Random-Effect Multiple QTL Mapping in Autopolyploids
Prediction of QTL-based breeding values from REMIM model
Fixed-effect interval mapping (FEIM)
Fits multiple QTL models
Fits multiple QTL models
Adapt to sommer MNR core function
Modify QTL model
Null model
Null model
Model optimization
Fixed-effect interval mapping (FEIM) model permutations
Logarithm of P-value (LOP) profile plots
QTL heritability and significance plot
QTLs with respective support interval plots
QTL profiling
QTL allele effect estimation
Read genotypic and phenotypic data
Read genotypic and phenotypic data
Random-effect multiple interval mapping (REMIM)
Random-effect multiple interval mapping (REMIM)
QTL forward search
Simulations of multiple QTL
Performs random-effect multiple interval mapping (REMIM) in full-sib families of autopolyploid species based on restricted maximum likelihood (REML) estimation and score statistics, as described in Pereira et al. (2020) <doi:10.1534/genetics.120.303080>.
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