MultBiplotR23.11.0 package

Multivariate Analysis Using Biplots in R

Canonical.Variate.Analysis

Biplot representation of a Canonical Variate Analysis or a Manova (Can...

CanonicalBiplot

Biplot representation of a Canonical Variate Analysis or a Manova (Can...

RidgeBinaryLogistic

Ridge Binary Logistic Regression for Binary data

RidgeBinaryLogisticFit

Fits a binary logistic regression with ridge penalization

RidgeMultinomialLogisticFit

Multinomial logistic regression with ridge penalization

RidgeMultinomialLogisticRegression

Ridge Multinomial Logistic Regression

RidgeOrdinalLogistic

Ordinal logistic regression with ridge penalization

scores.CCA.sol

Extract the scores of a CCA solution object

SeparateVarTypes

Separation of different types of variables into a list

SimpleProcrustes

Simple Procrustes Analysis

AddBinVars2Biplot

Add suplementary binary variables to a biplot

AddCluster2Biplot

Add clusters to a biplot object

AddContVars2Biplot

Adds supplementary continuous variables to a biplot object

AddOrdVars2Biplot

Adds supplementary ordinal variables to an existing biplot objects.

AddSupVars2Biplot

Adds supplementary variables to a biplot object

anova.RidgeBinaryLogistic

Compares two binary logistic models

Bartlett.Tests

Bartlett tests

BasicDescription

Basic descriptive sataistics

BinaryDistances

Binary Distances

BinaryLogBiplotEM

Binary logistic biplot with the EM algorithm.

BinaryLogBiplotGD

Binary Logistic Biplot with Gradient Descent Estimation

BinaryLogBiplotGDRecursive

Binary Logistic Biplot with Recursive Gradient Descent Estimation

BinaryLogBiplotJoint

Binary logistic biplot with a gradient descent algorithm.

BinaryLogBiplotMirt

Binary logistic biplot with Item Response Theory.

BinaryLogisticBiplot

Binary Logistic Biplot

BinaryPLSFit

Binary PLS Regression.

BinaryPLSR

Partial Least Squares Regression with Binary Data

BinaryProximities

Proximity Measures for Binary Data

Biplot.BinaryPLSR

Biplot for a PLSR model with binary data

Biplot.PLSR

Partial Least Squares Biplot

Biplot.PLSR1BIN

Biplot for a PLSR model with a binary response

Biplot.PLSRBIN

Biplot for a PLSR model with binary responses

BiplotFPCA

External Biplot for functional data from a functional PCA object.

BootstrapDistance

Bootstrap on the distance matrices used for Principal Coordinates Anal...

BootstrapScalar

Bootstrap on the scalar product matrices used for Principal Coordinate...

BootstrapSmacof

Bootstrap on the distance matrices used for MDS with Smacof

BoxPlotPanel

Panel of box plots

CA

Correspondence Analysis

CanonicalDistanceAnalysis

MANOVA and Canonical Analysis of Distances

CanonicalStatisBiplot

CANONICAL STATIS-ACT for multiple tables with common rows and its asso...

CategoricalDistances

Distances among individuals using nominal variables.

CategoricalProximities

Proximities among individuals using nominal variables.

CCA

Canonical Correspondence Analysis

CheckBinaryMatrix

Checks if a data matrix is binary

CheckBinaryVector

Checks if a vector is binary

Circle

Draws a circle

Coinertia

Coinertia Analysis.

ColContributionPlot

Plots the contributios of a biplot

ConcEllipse

Concentration ellipse for a se of two-dimensional points

ConfidenceInterval

Confidence Interval for the mean

ConstrainedLogisticBiplot

Constrained Binary Logistic Biplot

ConstrainedOrdinalLogisticBiplot

Constrained Ordinal Logistic Biplot

ContinuousDistances

Distances for Continuous Data

ContinuousProximities

Proximities for Continuous Data

Convert2ThreeWay

Three way array from a two way matrix

Convert3wArray2List

Converts a three way array into a list

ConvertFactors2Integers

Convert a factor to integer numbers

ConvertList23wArray

Converts a list of matrices into a three way array

CorrelationCircle

Circle of correlations

CrissCross

Alternated Least Squares Biplot

CumSum

Cummulative sums

Dataframe2BinaryMatrix

Converts a Data Frame into a Binary Data Matrix

DataFrame2Matrix4Regression

Prepares a matrix for regression from a data frame

DensityBiplot

Adds Non-parametric densities to a biplot. Separated densities are cal...

Dhats

Calculation of Disparities

diagonal

Diagonal matrix from a vector

DimensionLabels

Labels for the selected dimensions in a biplot

dlines

Connects two sets of points by lines

ErrorBarPlotPanel

Plots a panel of error bars

EuclideanDistance

Classical Euclidean Distance (Pythagorean Distance)

ExpandTable

Expands a compressed table of patterns and frequencies

ExternalBinaryLogisticBiplot

External Logistic Biplot for binary Data

ExtractTable

Extracts unique patterns and its frequencies for a discrete data matri...

FA.Biplot

Biplot for Factor Analysis.

Factor2Binary

Converts a Factor into its indicator matrix

Fraction

Selection of a fraction of the data

Games_Howell

Games-Howell post-hoc tests for Welch's one-way analysis

GD.Biplot

Biplot for continuous data based on gradient descent methods

GeneralizedProcrustes

Generalized Procrustes Analysis

GetBiplotScales

Calculates the scales for the variables on a linear biplot

GetCCAScales

Calculates scales for plotting the environmental variables in a Canoni...

ginv

G inverse

GowerProximities

Gower Dissimilarities for mixed types of data

GowerSimilarities

Gower Dissimilarities for mixed types of data

Hermquad

Gauss-Hermite quadrature

HistogramPanel

Panel of histograms

HJ.Biplot

HJ Biplot with added features.

InBox

Checks if a point is inside a box.

InitialTransform

Initial transformation of data

Integer2Binary

Transforms an Integer Variable into a Binary Variable

Kruskal.Wallis.Tests

Kruskal Wallis Tests

Levene.Tests

Levene Tests

LogFrequencyBiplot

Weighted Biplot for a table of frequencies

logit

Logit function

Matrix2Proximities

Matrix to Proximities

matrixsqrt

Matrix squared root

matrixsqrtinv

Inverse of the Matrix squared root

MDS

Multidimensional Scaling

MGC

Mixture Gaussian Clustering

MonotoneRegression

Weighted Isotonic Regression (Weighted Monotone Regression)

MultBiplotR-package

Multivariate Analysis using Biplots

Multiquad

Multidimensional Gauss-Hermite quadrature

MultiTableStatistics

Statistics for multiple tables

MultiTableTransform

Initial Transformation of a multi table object

NiceNumber

Nice numbers: simple decimal numbers

NIPALS.Biplot

Biplot using the NIPALS algorithm

NIPALSPCA

NIPALS algorithm for PCA

NominalDistances

Distances among individuals with nominal variables

NormalityTests

Normality tests

Numeric2Binary

Converts a numeric variable into a binary one

ones

Matrix of ones

OrdinalLogisticFit

Fits an ordinal logistic regression with ridge penalization

OrdLogBipEM

Alternated EM algorithm for Ordinal Logistic Biplots

OrdVarBiplot

Plots an ordinal variable on the biplot

OrdVarCoordinates

Coordinates of an ordinal variable on the biplot.

OrthogonalizeScores

Orthogonalize a set of Scores calculated by other procedure

PCA.Analysis

Classical PCA Biplot with added features.

PCA.Biplot

Classical PCA Biplot with added features.

PCA.Bootstrap

Principal Components Analysis with bootstrap confidence intervals.

PCoABootstrap

Plots an object of class PCoABootstrap

plot.Binary.Logistic.Biplot

Plots the results of a Binary Logistic Biplot

plot.CA.sol

Plot the solution of a Coorespondence Analysis

plot.Canonical.Biplot

Plots a Canonical Biplot

plot.CanonicalDistanceAnalysis

Plots a Canonical Distance Analysis

plot.CCA.sol

Plots the solution of a Canonical Correspondence Analysisis

plot.ContinuousBiplot

Plots a biplot for continuous data.

plot.CVA

Plot of a Canonical Variate Analysis

plot.ellipse

Plot a concentration ellipse.

plot.External.Binary.Logistic.Biplot

Plots an External Logistic Biplot for binary data

plot.fraction

Plots a fraction of the data as a cluster

plot.MGC

Plot the results of Model-Based Gaussian Clustering algorithms

plot.Ordinal.Logistic.Biplot

Plots an ordinal Logistic Biplot

plot.PCA.Analysis

Plots a Principal Component Analysis

plot.PCA.Bootstrap

Plots the Bootstrap information for Principal Components Analysis (PCA...

plot.Principal.Coordinates

Plots an object of class Principal.Coordinates

plot.Procrustes

Plots an object of class "Procrustes"

plot.StatisBiplot

Plots a Statis Biplot Object

plot.TetraDualStatis

Plots an object of class "tetraDualStatis".

plot.Unfolding

Plots an Unfolding Representation

PlotBiplotClusters

Plot clusters on a biplot.

PlotOrdinalResponses

Plot the response functions along the directions of best fit.

PLSR

Partial Least Squares Regression

PLSR1Bin

Partial Least Squares Regression with Binary Response

PLSRBin

Partial Least Squares Regression with several Binary Responses

PLSRBinFit

PLS binary regression.

PLSRfit

Partial Least Squares Regression (PLSR)

PolyOrdinalLogBiplot

Factor Analysis Biplot based on polychoric correlations

PrettyTicks

Calculates loose axis ticks and labels using nice numbers

PrincipalCoordinates

Principal Coordinates Analysis

print.MGC

Prints the results of Model-Based Gaussian Clustering algorithms

print.RidgeBinaryLogistic

prints an object of class RidgeBinaryLogistic

RemoveRowsWithNaNs

Remove rows that contains NaNs (missing data)

SMACOF

SMACOF

Sparse.NIPALSPCA

Sparse version of the NIPALS algorithm for PCA.

StatisBiplot

STATIS-ACT for multiple tables with common rows and its associated Bip...

summary.Canonical.Biplot

Summary of the solution of a Canonical Biplot Analysis

summary.CCA.sol

Summary of the solution of a CCA

summary.ContinuousBiplot

Summary of the solution of a Biplot for Continuous Data

summary.CVA

Summary of a Canonical Variate Analysis

summary.MGC

Summary of Model-Based Gaussian Clustering results

summary.PCA.Analysis

Summary of the results of a PCA.

summary.PCA.Bootstrap

Summary of a PCA.Bootstrap object

summary.PLSR

Summary of a PLSR object

summary.PLSR1Bin

Summary of PLSR with a Binary Response

summary.Principal.Coordinates

Summary of the results of a Principal Coordinates Analysis

summary.RidgeBinaryLogistic

Summary of a Binary Logistic Regression with Ridge Penalization

summary.TetraDualStatis

Summary of the results of TetraDualStatis

t3pcovr

Tucker 3 Principal Covariates Regression

TetraDualStatis

Dual STATIS-ACT for binary data based on Tetrachoric Correlations

textsmart

Labels of a Scatter

Three2TwoWay

Converts a multitable list to a two way matrix

ThreeWay2FrontalSlices

Three to two way data

TransformIni

Initial transformation of a data matrix

Truncated.NIPALSPCA

Truncated version of the NIPALS algorithm for PCA.

Unfolding

Multidimensional Unfolding

VarBiplot

Draws a variable on a biplot

wa

Extracts the weighted averages of a CCA solution

wcor

Weighted correlations

weighted.quantile

Weighted quantiles

WeightedPCoA

Weighted Principal Coordinates Analysis

zeros

Matrix of zeros as in Matlab

Several multivariate techniques from a biplot perspective. It is the translation (with many improvements) into R of the previous package developed in 'Matlab'. The package contains some of the main developments of my team during the last 30 years together with some more standard techniques. Package includes: Classical Biplots, HJ-Biplot, Canonical Biplots, MANOVA Biplots, Correspondence Analysis, Canonical Correspondence Analysis, Canonical STATIS-ACT, Logistic Biplots for binary and ordinal data, Multidimensional Unfolding, External Biplots for Principal Coordinates Analysis or Multidimensional Scaling, among many others. References can be found in the help of each procedure.

  • Maintainer: Jose Luis Vicente Villardon
  • License: GPL (>= 2)
  • Last published: 2023-11-21