Evolutionary Quantitative Genetics
Alpha repeatability
Calculate Covariance Matrix from a linear model fitted with lm() using...
R2 confidence intervals by bootstrap resampling
Bootstrap analysis via resampling
Non-Parametric population samples and statistic comparison
Calculates mean correlations within- and between-modules
Integration measure based on eigenvalue dispersion
Calculates the ICV of a covariance matrix.
Mean Squared Correlations
Corrected integration value
Parametric per trait repeatabilities
Calculate Covariance Matrix from a linear model fitted with lm()
Centered jacobian residuals
Generic Comparison Map functions for creating parallel list methods In...
Creates binary correlation matrices
Compare matrices via the correlation between response vectors
Test drift hypothesis
Eigentensor Decomposition
EvolQG
Control Inverse matrix noise with Extension
Local Jacobian calculation
Compare matrices via Krzanowski Correlation
Compare matrices via Modified Krzanowski Correlation
Krzanowski common subspaces analysis
Quasi-Bayesian Krzanowski subspace comparison
Extract confidence intervals from KrzSubspaceBootstrap
L Modularity
Local Shape Variables
Compare matrices via Mantel Correlation
Test single modularity hypothesis using Mantel correlation
Matrix Compare
Matrix distance
Mean Covariance Matrix
Calculate mean values for various matrix statistics
Modularity and integration analysis tool
R2 confidence intervals by parametric sampling
Parametric repeatabilities with covariance or correlation matrices
Parametric population samples with covariance or correlation matrices
Calculate Mahalonabis distance for many vectors
Multivariate genetic drift test for 2 populations
Normalize and Norm
Distribution overlap distance
Create binary hypothesis
Compare matrices using PCA similarity factor
PC Score Correlation Test
Compares sister groups
Mantel test with phylogenetic permutations
Calculates ancestral states of some statistic
Plot KrzSubspace boostrap comparison
Plot Rarefaction analysis
Plot results from TreeDriftTest
Print Matrix to file
Project Covariance Matrix
Random correlation matrix
Random matrices for tests
Compare matrices via RandomSkewers
Rarefaction analysis via resampling
Non-Parametric rarefacted population samples and statistic comparison
Relative Eigenanalysis
Remove Size Variation
Revert Matrix
Matrix Riemann distance
Midline rotate
Random Skewers projection
Generic Single Comparison Map functions for creating parallel list met...
Compare matrices via Selection Response Decomposition
Test modularity hypothesis
TPS transform
Drift test along phylogeny
Provides functions for covariance matrix comparisons, estimation of repeatabilities in measurements and matrices, and general evolutionary quantitative genetics tools. Melo D, Garcia G, Hubbe A, Assis A P, Marroig G. (2016) <doi:10.12688/f1000research.7082.3>.