Generate Publication Ready Visualizations of Single Cell Transcriptomics Data
Compute affinity of gene sets to cell populations using decoupleR.
Generate Alluvial plots.
Create Bar Plots.
BeeSwarm plot.
Generate Box Plots.
Cellular States plot.
Generate a Chord diagram.
Display CNV scores from inferCNV as Feature Plots.
Generate colorblind variations of a given color palette.
Generate color scales based on a value.
Create correlation matrix heatmaps.
Wrapper for DimPlot .
This function is a wrapper for DotPlot . It provides most of its funct...
Create enrichment scores heatmaps.
Create heatmaps of averaged expression by groups.
Wrapper for FeaturePlot .
Compute a dotplot with the results of a group-wise DE analysis.
Visualize Ligand-Receptor analysis output.
Compute a heatmap summary of the top and bottom genes in the PCA loadi...
Compute a heatmap of categorical variables.
Wrapper for Nebulosa::plot_density in Seurat.
Generate a status report of SCpubr and its dependencies.
Plot Pathway Activities from decoupleR using Progeny prior knowledge.
Compute a heatmap of enrichment of gene sets on the context of a dimen...
Compute a heatmap of expression of genes on the context of a dimension...
Create ridge plots.
Perform a single-cell-based heatmap showing the enrichment in a list o...
Perform a single-cell-based heatmap showing the expression of genes.
Generate a Strip plot.
Display the enriched terms for a given list of genes.
Plot TF Activities from decoupleR using Dorothea prior knowledge.
Wrapper for VlnPlot .
Compute a Volcano plot out of DE genes.
Display the enriched terms for a given list of genes.
Mock function used to document all main function.
Named list.
Named vector.
A system that provides a streamlined way of generating publication ready plots for known Single-Cell transcriptomics data in a “publication ready” format. This is, the goal is to automatically generate plots with the highest quality possible, that can be used right away or with minimal modifications for a research article.
Useful links