Analysis of Ecological and Environmental Data - CRAN Task View

ade4

Analysis of Ecological Data: Exploratory and Euclidean Methods in Envi...

Version 1.7-22

evir

Extreme Values in R

Version 1.7-4

amap

Another Multidimensional Analysis Package

Version 0.8-19.1

aod

Analysis of Overdispersed Data

Version 1.3.3

ape

Analyses of Phylogenetics and Evolution

Version 5.8

biogrowth

Modelling of Population Growth

Version 1.0.4

boral

Bayesian Ordination and Regression AnaLysis

Version 2.0.2

boussinesq

Analytic Solutions for (Ground-Water) Boussinesq Equation

Version 1.0.6

gjam

Generalized Joint Attribute Modeling

Version 2.6.2

bReeze

Functions for Wind Resource Assessment

Version 0.4-4

CircStats

Circular Statistics, from "Topics in Circular Statistics" (2001)

Version 0.2-6

cluster

"Finding Groups in Data": Cluster Analysis Extended Rousseeuw et al.

Version 2.1.6

cocorresp

Co-Correspondence Analysis Methods

Version 0.4-4

FD

Measuring Functional Diversity (FD) from Multiple Traits, and Other To...

Version 1.0-12.3

Distance

Distance Sampling Detection Function and Abundance Estimation

Version 1.0.9

dsm

Density Surface Modelling of Distance Sampling Data

Version 2.3.3

dyn

Time Series Regression

Version 0.2-9.6

dynlm

Dynamic Linear Regression

Version 0.3-6

e1071

Misc Functions of the Department of Statistics, Probability Theory Gro...

Version 1.7-16

earth

Multivariate Adaptive Regression Splines

Version 5.3.3

ecoCopula

Graphical Modelling and Ordination using Copulas

Version 1.0.2

ecodist

Dissimilarity-Based Functions for Ecological Analysis

Version 2.1.3

untb

Ecological Drift under the UNTB

Version 1.7-7-1

equivalence

Provides Tests and Graphics for Assessing Tests of Equivalence

Version 0.7.2

evdbayes

Bayesian Analysis in Extreme Value Theory

Version 1.1-3

extRemes

Extreme Value Analysis

Version 2.1-4

RMAWGEN

Multi-Site Auto-Regressive Weather GENerator

Version 1.3.7

flexmix

Flexible Mixture Modeling

Version 2.3-19

fso

Fuzzy Set Ordination

Version 2.1-2

gamair

Data for 'GAMs: An Introduction with R'

Version 1.0-2

MASS

Support Functions and Datasets for Venables and Ripley's MASS

Version 7.3-61

gllvm

Generalized Linear Latent Variable Models

Version 1.4.3

ismev

An Introduction to Statistical Modeling of Extreme Values

Version 1.42

labdsv

Ordination and Multivariate Analysis for Ecology

Version 2.1-0

maptree

Mapping, Pruning, and Graphing Tree Models

Version 1.4-8

marked

Mark-Recapture Analysis for Survival and Abundance Estimation

Version 1.2.8

mclust

Gaussian Mixture Modelling for Model-Based Clustering, Classification,...

Version 6.1.1

mda

Mixture and Flexible Discriminant Analysis

Version 0.5-4

metacom

Analysis of the 'Elements of Metacommunity Structure'

Version 1.5.3

mgcv

Mixed GAM Computation Vehicle with Automatic Smoothness Estimation

Version 1.9-1

mrds

Mark-Recapture Distance Sampling

Version 2.3.0

mvabund

Statistical Methods for Analysing Multivariate Abundance Data

Version 4.2.1

oce

Analysis of Oceanographic Data

Version 1.8-3

ouch

Ornstein-Uhlenbeck Models for Phylogenetic Comparative Hypotheses

Version 2.20

pastecs

Package for Analysis of Space-Time Ecological Series

Version 1.4.2

pgirmess

Spatial Analysis and Data Mining for Field Ecologists

Version 2.0.3

popbio

Construction and Analysis of Matrix Population Models

Version 2.8

soiltexture

Functions for Soil Texture Plot, Classification and Transformation

Version 1.5.3

seacarb

Seawater Carbonate Chemistry

Version 3.3.3

pscl

Political Science Computational Laboratory

Version 1.5.9

rtop

Interpolation of Data with Variable Spatial Support

Version 0.6-9

sensitivity

Global Sensitivity Analysis of Model Outputs and Importance Measures

Version 1.30.1

unmarked

Models for Data from Unmarked Animals

Version 1.4.3

rpart

Recursive Partitioning and Regression Trees

Version 4.1.23

StreamMetabolism

Calculate Single Station Metabolism from Diurnal Oxygen Curves

Version 1.1.3

qualV

Qualitative Validation Methods

Version 0.3-5

VGAM

Vector Generalized Linear and Additive Models

Version 1.1-12

zoo

S3 Infrastructure for Regular and Irregular Time Series (Z's Ordered O...

Version 1.8-12

topmodel

Implementation of the Hydrological Model TOPMODEL in R

Version 0.7.5

quantregGrowth

Non-Crossing Additive Regression Quantiles and Non-Parametric Growth C...

Version 1.7-1

RMark

R Code for Mark Analysis

Version 3.0.0

strucchange

Testing, Monitoring, and Dating Structural Changes

Version 1.5-4

Rcapture

Loglinear Models for Capture-Recapture Experiments

Version 1.4-4

seas

Seasonal Analysis and Graphics, Especially for Climatology

Version 0.6-0

siplab

Spatial Individual-Plant Modelling

Version 1.6

simecol

Simulation of Ecological (and Other) Dynamic Systems

Version 0.8-14

sjSDM

Scalable Joint Species Distribution Modeling

Version 1.0.6

pvclust

Hierarchical Clustering with P-Values via Multiscale Bootstrap Resampl...

Version 2.2-0

spOccupancy

Single-Species, Multi-Species, and Integrated Spatial Occupancy Models

Version 0.7.6

analogue

Analogue and Weighted Averaging Methods for Palaeoecology

Version 0.17-7

evd

Functions for Extreme Value Distributions

Version 2.3-7.1

openair

Tools for the Analysis of Air Pollution Data

Version 2.18-2

randomForest

Breiman and Cutlers Random Forests for Classification and Regression

Version 4.7-1.2

nlme

Linear and Nonlinear Mixed Effects Models

Version 3.1-166

Hmsc

Hierarchical Model of Species Communities

Version 3.0-13

forecast

Forecasting Functions for Time Series and Linear Models

Version 8.23.0

prabclus

Functions for Clustering and Testing of Presence-Absence, Abundance an...

Version 2.3-4

quantreg

Quantile Regression

Version 5.98

mefa

Multivariate Data Handling in Ecology and Biogeography

Version 3.2-9

nsRFA

Non-Supervised Regional Frequency Analysis

Version 0.7-17

tseries

Time Series Analysis and Computational Finance

Version 0.10-58

glmmTMB

Generalized Linear Mixed Models using Template Model Builder

Version 1.1.10

rioja

Analysis of Quaternary Science Data

Version 1.0-7

R2jags

Using R to Run 'JAGS'

Version 0.8-5

surveillance

Temporal and Spatio-Temporal Modeling and Monitoring of Epidemic Pheno...

Version 1.24.0

secr

Spatially Explicit Capture-Recapture

Version 5.0.0

TMB

Template Model Builder: A General Random Effect Tool Inspired by 'ADMB...

Version 1.9.15

lme4

Linear Mixed-Effects Models using 'Eigen' and S4

Version 1.1-35.5

gam

Generalized Additive Models

Version 1.22-5

singleRcapture

Single-Source Capture-Recapture Models

Version 0.2.1.2

ipred

Improved Predictors

Version 0.9-15

circular

Circular Statistics

Version 0.5-1

aqp

Algorithms for Quantitative Pedology

Version 2.0.4

party

A Laboratory for Recursive Partytioning

Version 1.3-17

EnvStats

Package for Environmental Statistics, Including US EPA Guidance

Version 3.0.0

vegan

Community Ecology Package

Version 2.6-8

BiodiversityR

Package for Community Ecology and Suitability Analysis

Version 2.16-1

Rbeast

Bayesian Change-Point Detection and Time Series Decomposition

Version 1.0.1

segmented

Regression Models with Break-Points / Change-Points Estimation (with P...

Version 2.1-2

PMCMRplus

Calculate Pairwise Multiple Comparisons of Mean Rank Sums Extended

Version 1.9.12