Bayesian Inference - CRAN Task View

abc

Tools for Approximate Bayesian Computation (ABC)

Version 2.2.1

abcrf

Approximate Bayesian Computation via Random Forests

Version 1.9

abglasso

Adaptive Bayesian Graphical Lasso

Version 0.1.1

abtest

Bayesian A/B Testing

Version 1.0.1

acebayes

Optimal Bayesian Experimental Design using the ACE Algorithm

Version 1.10

bayesQR

Bayesian Quantile Regression

Version 2.4

AdMit

Adaptive Mixture of Student-t Distributions

Version 2.1.9

BayesARIMAX

Bayesian Estimation of ARIMAX Model

Version 0.1.1

BayesCACE

Bayesian Model for CACE Analysis

Version 1.2.3

BayesCombo

Bayesian Evidence Combination

Version 1.0

BayesComm

Bayesian Community Ecology Analysis

Version 0.1-2

bayesanova

Bayesian Inference in the Analysis of Variance via Markov Chain Monte ...

Version 1.6

bayesammi

Bayesian Estimation of the Additive Main Effects and Multiplicative In...

Version 0.3.0

ammiBayes

Bayesian Ammi Model for Continuous Data

Version 1.0-2

AnaCoDa

Analysis of Codon Data under Stationarity using a Bayesian Framework

Version 0.1.4.4

AovBay

Classic, Nonparametric and Bayesian One-Way Analysis of Variance Panel

Version 0.1.0

APFr

Multiple Testing Approach using Average Power Function (APF) and Bayes...

Version 1.0.2

arm

Data Analysis Using Regression and Multilevel/Hierarchical Models

Version 1.14-4

ashr

Methods for Adaptive Shrinkage, using Empirical Bayes

Version 2.2-63

baycn

Bayesian Inference for Causal Networks

Version 1.2.0

bayefdr

Bayesian Estimation and Optimisation of Expected False Discovery Rate

Version 0.2.1

BayesBinMix

Bayesian Estimation of Mixtures of Multivariate Bernoulli Distribution...

Version 1.4.1

bayesbio

Miscellaneous Functions for Bioinformatics and Bayesian Statistics

Version 1.0.0

bayesboot

An Implementation of Rubin's (1981) Bayesian Bootstrap

Version 0.2.2

BayesBP

Bayesian Estimation using Bernstein Polynomial Fits Rate Matrix

Version 1.1

BACCO

Bayesian Analysis of Computer Code Output (BACCO)

Version 2.1-0

BACCT

Bayesian Augmented Control for Clinical Trials

Version 1.0

baggr

Bayesian Aggregate Treatment Effects

Version 0.7.8

bayesAB

Fast Bayesian Methods for AB Testing

Version 1.1.3

BaM

Functions and Datasets for "Bayesian Methods: A Social and Behavioral ...

Version 1.0.3

BANOVA

Hierarchical Bayesian ANOVA Models

Version 1.2.1

bartMachine

Bayesian Additive Regression Trees

Version 1.3.4.1

basad

Bayesian Variable Selection with Shrinking and Diffusing Priors

Version 0.3.0

BART

Bayesian Additive Regression Trees

Version 2.9.9

basicMCMCplots

Trace Plots, Density Plots and Chain Comparisons for MCMC Samples

Version 0.2.7

BaSkePro

Bayesian Model to Archaeological Faunal Skeletal Profiles

Version 1.1.1

bayescopulareg

Bayesian Copula Regression

Version 0.1.3

bayescount

Power Calculations and Bayesian Analysis of Count Distributions and FE...

Version 0.9.99-9

BayesCR

Bayesian Analysis of Censored Regression Models Under Scale Mixture of...

Version 2.1

bayesCT

Simulation and Analysis of Adaptive Bayesian Clinical Trials

Version 0.99.3

BayesCTDesign

Two Arm Bayesian Clinical Trial Design with and Without Historical Con...

Version 0.6.1

BayesDA

Functions and Datasets for the book "Bayesian Data Analysis"

Version 2012.04-1

bayesdfa

Bayesian Dynamic Factor Analysis (DFA) with 'Stan'

Version 1.3.3

bayesdistreg

Bayesian Distribution Regression

Version 0.1.0

bayesDP

Implementation of the Bayesian Discount Prior Approach for Clinical Tr...

Version 1.3.6

BayesFactor

Computation of Bayes Factors for Common Designs

Version 0.9.12-4.7

bayesGAM

Fit Multivariate Response Generalized Additive Models using Hamiltonia...

Version 0.0.2

bayesGARCH

Bayesian Estimation of the GARCH(1,1) Model with Student-t Innovations

Version 2.1.10

BayesGOF

Bayesian Modeling via Frequentist Goodness-of-Fit

Version 5.2

BayesGPfit

Fast Bayesian Gaussian Process Regression Fitting

Version 1.1.0

BayesGWQS

Bayesian Grouped Weighted Quantile Sum Regression

Version 0.1.1

bayesianETAS

Bayesian Estimation of the ETAS Model for Earthquake Occurrences

Version 1.0.3

Bayesiangammareg

Bayesian Gamma Regression: Joint Mean and Shape Modeling

Version 0.1.0

BayesianGLasso

Bayesian Graphical Lasso

Version 0.2.0

BayesianLaterality

Predict Brain Asymmetry Based on Handedness and Dichotic Listening

Version 0.1.2

CausalImpact

Inferring Causal Effects using Bayesian Structural Time-Series Models

Version 1.3.0

BayesianTools

General-Purpose MCMC and SMC Samplers and Tools for Bayesian Statistic...

Version 0.1.8

bayesImageS

Bayesian Methods for Image Segmentation using a Potts Model

Version 0.6-1

BayesLCA

Bayesian Latent Class Analysis

Version 1.9

bayesLife

Bayesian Projection of Life Expectancy

Version 5.2-0

BayesLN

Bayesian Inference for Log-Normal Data

Version 0.2.10

BayesLogit

PolyaGamma Sampling

Version 2.1

bayeslongitudinal

Adjust Longitudinal Regression Models Using Bayesian Methodology

Version 0.1.0

bayesm

Bayesian Inference for Marketing/Micro-Econometrics

Version 3.1-6

bayesmeta

Bayesian Random-Effects Meta-Analysis and Meta-Regression

Version 3.4

bayesmix

Bayesian Mixture Models with JAGS

Version 0.7-6

bayesplot

Plotting for Bayesian Models

Version 1.11.1

BayesTree

Bayesian Additive Regression Trees

Version 0.3-1.5

BayesVarSel

Bayes Factors, Model Choice and Variable Selection in Linear Models

Version 2.2.5

BayesX

R Utilities Accompanying the Software Package BayesX

Version 0.3-3

BAYSTAR

On Bayesian Analysis of Threshold Autoregressive Models

Version 0.2-10

BCBCSF

Bias-Corrected Bayesian Classification with Selected Features

Version 1.0-1

BLR

Bayesian Linear Regression

Version 1.6

bmixture

Bayesian Estimation for Finite Mixture of Distributions

Version 1.7

BMS

Bayesian Model Averaging Library

Version 0.3.5

BNSP

Bayesian Non- And Semi-Parametric Model Fitting

Version 2.2.3

boa

Bayesian Output Analysis Program (BOA) for MCMC

Version 1.1.8-2

Bolstad

Functions for Elementary Bayesian Inference

Version 0.2.42

Boom

Bayesian Object Oriented Modeling

Version 0.9.15

BoomSpikeSlab

MCMC for Spike and Slab Regression

Version 1.2.6

bqtl

Bayesian QTL Mapping Toolkit

Version 1.0-38

bridgesampling

Bridge Sampling for Marginal Likelihoods and Bayes Factors

Version 1.1-2

bspec

Bayesian Spectral Inference

Version 1.6

bspmma

Bayesian Semiparametric Models for Meta-Analysis

Version 0.1-2

BVAR

Hierarchical Bayesian Vector Autoregression

Version 1.0.5

bvarsv

Bayesian Analysis of a Vector Autoregressive Model with Stochastic Vol...

Version 1.1

CARBayes

Spatial Generalised Linear Mixed Models for Areal Unit Data

Version 6.1.1

CARBayesdata

Data Used in the Vignettes Accompanying the CARBayes and CARBayesST Pa...

Version 3.0

CARBayesST

Spatio-Temporal Generalised Linear Mixed Models for Areal Unit Data

Version 4.0

CircSpaceTime

Spatial and Spatio-Temporal Bayesian Model for Circular Data

Version 0.9.0

coalescentMCMC

MCMC Algorithms for the Coalescent

Version 0.4-4

coda

Output Analysis and Diagnostics for MCMC

Version 0.19-4.1

CPBayes

Bayesian Meta Analysis for Studying Cross-Phenotype Genetic Associatio...

Version 1.1.0

dclone

Data Cloning and MCMC Tools for Maximum Likelihood Methods

Version 2.3-2

deBInfer

Bayesian Inference for Differential Equations

Version 0.4.4

densEstBayes

Density Estimation via Bayesian Inference Engines

Version 1.0-2.2

DIRECT

Bayesian Clustering of Multivariate Data Under the Dirichlet-Process P...

Version 1.1.0

EbayesThresh

Empirical Bayes Thresholding and Related Methods

Version 1.4-12

ebdbNet

Empirical Bayes Estimation of Dynamic Bayesian Networks

Version 1.2.8

eigenmodel

Semiparametric Factor and Regression Models for Symmetric Relational D...

Version 1.11

ensembleBMA

Probabilistic Forecasting using Ensembles and Bayesian Model Averaging

Version 5.1.8

EntropyMCMC

MCMC Simulation and Convergence Evaluation using Entropy and Kullback-...

Version 1.0.4

bamdit

Bayesian Meta-Analysis of Diagnostic Test Data

Version 3.4.3

factorstochvol

Bayesian Estimation of (Sparse) Latent Factor Stochastic Volatility Mo...

Version 1.1.0

FME

A Flexible Modelling Environment for Inverse Modelling, Sensitivity, I...

Version 1.3.6.3

geoR

Analysis of Geostatistical Data

Version 1.9-4

ggmcmc

Tools for Analyzing MCMC Simulations from Bayesian Inference

Version 1.5.1.1

hbsae

Hierarchical Bayesian Small Area Estimation

Version 1.2

iterLap

Approximate Probability Densities by Iterated Laplace Approximations

Version 1.1-4

LaplacesDemon

Complete Environment for Bayesian Inference

Version 16.1.6

LearnBayes

Functions for Learning Bayesian Inference

Version 2.15.1

lmm

Linear Mixed Models

Version 1.4

mcmc

Markov Chain Monte Carlo

Version 0.9-8

mcmcse

Monte Carlo Standard Errors for MCMC

Version 1.5-0

MCMCvis

Tools to Visualize, Manipulate, and Summarize MCMC Output

Version 0.16.3

mgcv

Mixed GAM Computation Vehicle with Automatic Smoothness Estimation

Version 1.9-1

mlogitBMA

Bayesian Model Averaging for Multinomial Logit Models

Version 0.1-9

mombf

Model Selection with Bayesian Methods and Information Criteria

Version 3.5.4

NetworkChange

Bayesian Package for Network Changepoint Analysis

Version 0.8

openEBGM

EBGM Disproportionality Scores for Adverse Event Data Mining

Version 0.9.1

bartCause

Causal Inference using Bayesian Additive Regression Trees

Version 1.0-9

pcFactorStan

Stan Models for the Paired Comparison Factor Model

Version 1.5.4

plotMCMC

MCMC Diagnostic Plots

Version 2.0.1

PReMiuM

Dirichlet Process Bayesian Clustering, Profile Regression

Version 3.2.13

prevalence

Tools for Prevalence Assessment Studies

Version 0.4.1

BAS

Bayesian Variable Selection and Model Averaging using Bayesian Adaptiv...

Version 1.7.5

runjags

Interface Utilities, Model Templates, Parallel Computing Methods and A...

Version 2.2.2-4

rstan

R Interface to Stan

Version 2.32.6

stochvol

Efficient Bayesian Inference for Stochastic Volatility (SV) Models

Version 3.2.5

SuperLearner

Super Learner Prediction

Version 2.0-29

shrinkTVP

Efficient Bayesian Inference for Time-Varying Parameter Models with Sh...

Version 3.0.1

R2WinBUGS

Running 'WinBUGS' and 'OpenBUGS' from 'R' / 'S-PLUS'

Version 2.1-22.1

pscl

Political Science Computational Laboratory

Version 1.5.9

rstanarm

Bayesian Applied Regression Modeling via Stan

Version 2.32.1

rjags

Bayesian Graphical Models using MCMC

Version 4-16

spBayes

Univariate and Multivariate Spatial-Temporal Modeling

Version 0.4-8

sna

Tools for Social Network Analysis

Version 2.8

BDgraph

Bayesian Structure Learning in Graphical Models using Birth-Death MCMC

Version 2.73

SequenceSpikeSlab

Exact Bayesian Model Selection Methods for the Sparse Normal Sequence ...

Version 1.0.1

ssMousetrack

Bayesian State-Space Modeling of Mouse-Tracking Experiments via Stan

Version 1.1.6

ramps

Bayesian Geostatistical Modeling with RAMPS

Version 0.6.18

ssgraph

Bayesian Graph Structure Learning using Spike-and-Slab Priors

Version 1.15

vglmer

Variational Inference for Hierarchical Generalized Linear Models

Version 1.0.6

shinybrms

Graphical User Interface ('shiny' App) for 'brms'

Version 1.8.0

spikeslab

Prediction and Variable Selection Using Spike and Slab Regression

Version 1.1.6

rstiefel

Random Orthonormal Matrix Generation and Optimization on the Stiefel M...

Version 1.0.1

RSGHB

Functions for Hierarchical Bayesian Estimation: A Flexible Approach

Version 1.2.2

sbgcop

Semiparametric Bayesian Gaussian Copula Estimation and Imputation

Version 0.980

zic

Bayesian Inference for Zero-Inflated Count Models

Version 0.9.1

causact

Fast, Easy, and Visual Bayesian Inference

Version 0.5.5

mcmcensemble

Ensemble Sampler for Affine-Invariant MCMC

Version 3.1.0

REBayes

Empirical Bayes Estimation and Inference

Version 2.56

Bergm

Bayesian Exponential Random Graph Models

Version 5.0.7

bayes4psy

User Friendly Bayesian Data Analysis for Psychology

Version 1.2.12

dirichletprocess

Build Dirichlet Process Objects for Bayesian Modelling

Version 0.4.2

BASS

Bayesian Adaptive Spline Surfaces

Version 1.3.1

bayesDccGarch

Methods and Tools for Bayesian Dynamic Conditional Correlation GARCH(1...

Version 3.0.4

bama

High Dimensional Bayesian Mediation Analysis

Version 1.3.0

LAWBL

Latent (Variable) Analysis with Bayesian Learning

Version 1.5.0

bayesforecast

Bayesian Time Series Modeling with Stan

Version 1.0.1

edina

Bayesian Estimation of an Exploratory Deterministic Input, Noisy and G...

Version 0.1.1

errum

Exploratory Reduced Reparameterized Unified Model Estimation

Version 0.0.3

dina

Bayesian Estimation of DINA Model

Version 2.0.0

dlm

Bayesian and Likelihood Analysis of Dynamic Linear Models

Version 1.1-6.1

bsamGP

Bayesian Spectral Analysis Models using Gaussian Process Priors

Version 1.2.5

rrum

Bayesian Estimation of the Reduced Reparameterized Unified Model with ...

Version 0.2.1

RoBMA

Robust Bayesian Meta-Analyses

Version 3.1.0

bayesian

Bindings for Bayesian TidyModels

Version 1.0.1

brms

Bayesian Regression Models using 'Stan'

Version 2.22.0

MNP

Fitting the Multinomial Probit Model

Version 3.1-5

BayesFM

Bayesian Inference for Factor Modeling

Version 0.1.7

bain

Bayes Factors for Informative Hypotheses

Version 0.2.11

MCMCglmm

MCMC Generalised Linear Mixed Models

Version 2.36

dbarts

Discrete Bayesian Additive Regression Trees Sampler

Version 0.9-28

bnlearn

Bayesian Network Structure Learning, Parameter Learning and Inference

Version 5.0.1

bartcs

Bayesian Additive Regression Trees for Confounder Selection

Version 1.2.2

mvgam

Multivariate (Dynamic) Generalized Additive Models

Version 1.1.3

loo

Efficient Leave-One-Out Cross-Validation and WAIC for Bayesian Models

Version 2.8.0

greta

Simple and Scalable Statistical Modelling in R

Version 0.5.0

Runuran

R Interface to the 'UNU.RAN' Random Variate Generators

Version 0.40

BayesianNetwork

Bayesian Network Modeling and Analysis

Version 0.3.2

gRain

Bayesian Networks

Version 1.4.5

bang

Bayesian Analysis, No Gibbs

Version 1.0.4

bamlss

Bayesian Additive Models for Location, Scale, and Shape (and Beyond)

Version 1.2-5

R2jags

Using R to Run 'JAGS'

Version 0.8-9

nimble

MCMC, Particle Filtering, and Programmable Hierarchical Modeling

Version 1.2.1

bsvarSIGNs

Bayesian SVARs with Sign, Zero, and Narrative Restrictions

Version 1.0.1

bayestestR

Understand and Describe Bayesian Models and Posterior Distributions

Version 0.15.0

BayesMallows

Bayesian Preference Learning with the Mallows Rank Model

Version 2.2.2

tgp

Bayesian Treed Gaussian Process Models

Version 2.4-23

revdbayes

Ratio-of-Uniforms Sampling for Bayesian Extreme Value Analysis

Version 1.5.5

BMA

Bayesian Model Averaging

Version 3.18.19

spikeSlabGAM

Bayesian Variable Selection and Model Choice for Generalized Additive ...

Version 1.1-20

bsvars

Bayesian Estimation of Structural Vector Autoregressive Models

Version 3.2

Hmisc

Harrell Miscellaneous

Version 5.2-1

MCMCpack

Markov Chain Monte Carlo (MCMC) Package

Version 1.7-1

Rbeast

Bayesian Change-Point Detection and Time Series Decomposition

Version 1.0.1

blavaan

Bayesian Latent Variable Analysis

Version 0.5-6

bayesianVARs

MCMC Estimation of Bayesian Vectorautoregressions

Version 0.1.5

spTimer

Spatio-Temporal Bayesian Modelling

Version 3.3.3