Agricultural Science - CRAN Task View

acdcR

Agro-Climatic Data by County

Version 1.0.0

AgroReg

Regression Analysis Linear and Nonlinear for Agriculture

Version 1.2.10

agrostab

Stability Analysis for Agricultural Research

Version 0.1.0

ag5Tools

Toolbox for Downloading and Extracting Copernicus AgERA5 Data

Version 0.0.2

AGPRIS

AGricultural PRoductivity in Space

Version 2.0

agricolae

Statistical Procedures for Agricultural Research

Version 1.3-7

agricolaeplotr

Visualization of Design of Experiments from the 'agricolae' Package

Version 0.5.0

agrifeature

Agriculture Image Feature

Version 1.0.3

agriTutorial

Tutorial Analysis of Some Agricultural Experiments

Version 0.1.5

agriwater

Evapotranspiration and Energy Fluxes Spatial Analysis

Version 1.0.2

agridat

Agricultural Datasets

Version 1.24

AgroR

Experimental Statistics and Graphics for Agricultural Sciences

Version 1.3.6

AgroTech

Data Analysis of Pesticide Application Technology

Version 1.0.2

ALUES

Agricultural Land Use Evaluation System

Version 0.2.1

bayesammi

Bayesian Estimation of the Additive Main Effects and Multiplicative In...

Version 0.3.0

ASMap

Linkage Map Construction using the MSTmap Algorithm

Version 1.0-8

rMVP

Memory-Efficient, Visualize-Enhanced, Parallel-Accelerated GWAS Tool

Version 1.3.0

BGGE

Bayesian Genomic Linear Models Applied to GE Genome Selection

Version 0.6.5

bigleaf

Physical and Physiological Ecosystem Properties from Eddy Covariance D...

Version 0.8.2

biotools

Tools for Biometry and Applied Statistics in Agricultural Science

Version 4.2

blocksdesign

Nested and Crossed Block Designs for Factorial and Unstructured Treatm...

Version 4.9

BWGS

BreedWheat Genomic Selection Pipeline

Version 0.2.1

cropdatape

Open Data of Agricultural Production of Crops of Peru

Version 1.0.0

cdlTools

Tools to Download and Work with USDA Cropscape Data

Version 1.13

climatrends

Climate Variability Indices for Ecological Modelling

Version 0.5

ClimMobTools

API Client for the 'ClimMob' Platform

Version 1.2

cropDemand

Spatial Crop Water Demand for Brazil

Version 1.0.3

cropZoning

Climate Crop Zoning Based in Air Temperature for Brazil

Version 1.0.3

Dasst

Tools for Reading, Processing and Writing 'DSSAT' Files

Version 0.3.4

hnp

Half-Normal Plots with Simulation Envelopes

Version 1.2-6

desplot

Plotting Field Plans for Agricultural Experiments

Version 1.10

DMMF

Daily Based Morgan-Morgan-Finney (DMMF) Soil Erosion Model

Version 0.5.2.0

drc

Analysis of Dose-Response Curves

Version 3.0-1

drcte

Statistical Approaches for Time-to-Event Data in Agriculture

Version 1.0.30

DSSAT

A Comprehensive R Interface for the DSSAT Cropping Systems Model

Version 0.0.9

eemdTDNN

EEMD and Its Variant Based Time Delay Neural Network Model

Version 0.1.0

epifitter

Analysis and Simulation of Plant Disease Progress Curves

Version 0.3.0

epiphy

Analysis of Plant Disease Epidemics

Version 0.5.0

Evapotranspiration

Modelling Actual, Potential and Reference Crop Evapotranspiration

Version 1.16

FAO56

Evapotranspiration Based on FAO Penman-Monteith Equation

Version 1.0

FielDHub

A Shiny App for Design of Experiments in Life Sciences

Version 1.4.2

FieldSimR

Simulation of Plot Errors and Phenotypes in Plant Breeding Field Trial...

Version 1.4.0

genesysr

Genesys PGR Client

Version 2.1.1

fruclimadapt

Evaluation Tools for Assessing Climate Adaptation of Fruit Tree Specie...

Version 0.4.5

FWRGB

Fresh Weight Determination from Visual Image of the Plant

Version 0.1.0

gge

Genotype Plus Genotype-by-Environment Biplots

Version 1.9

grapesAgri1

Collection of Shiny Apps for Agricultural Research Data Analysis

Version 1.1.0

GSelection

Genomic Selection

Version 0.1.0

GSMX

Multivariate Genomic Selection

Version 1.3

heritability

Marker-Based Estimation of Heritability Using Individual Plant or Plot...

Version 1.4

IBCF.MTME

Item Based Collaborative Filtering for Multi-Trait and Multi-Environme...

Version 1.6-0

ispd

Incomplete Split-Plot Designs

Version 0.2

KenSyn

Knowledge Synthesis in Agriculture - From Experimental Network to Meta...

Version 0.3

kgc

Koeppen-Geiger Climatic Zones

Version 1.0.0.2

kinship2

Pedigree Functions

Version 1.9.6.1

landsepi

Landscape Epidemiology and Evolution

Version 1.5.1

LinkageMapView

Plot Linkage Group Maps with Quantitative Trait Loci

Version 2.1.2

lmDiallel

Linear Fixed/Mixed Effects Models for Diallel Crosses

Version 1.0.1

LW1949

An Automated Approach to Evaluating Dose-Effect Experiments Following ...

Version 1.1.0

mapsRinteractive

Local Adaptation and Evaluation of Raster Maps

Version 2.0.1

meteor

Meteorological Data Manipulation

Version 0.4-5

MeTo

Meteorological Tools

Version 0.1.1

mlmm.gwas

Pipeline for GWAS Using MLMM

Version 1.0.6

MoBPS

Modular Breeding Program Simulator

Version 1.6.64

mvngGrAd

Moving Grid Adjustment in Plant Breeding Field Trials

Version 0.1.6

NutrienTrackeR

Food Composition Information and Dietary Assessment

Version 1.3.0

onemap

Construction of Genetic Maps in Experimental Crosses

Version 3.0.0

PBIBD

Partially Balanced Incomplete Block Designs

Version 1.3

rfieldclimate

Client for the 'FieldClimate' API

Version 0.1.1

pedigree

Pedigree Functions

Version 1.4.2

pedigreemm

Pedigree-Based Mixed-Effects Models

Version 0.3-5

pedometrics

Miscellaneous Pedometric Tools

Version 0.12.1

PesticideLoadIndicator

Computes Danish Pesticide Load Indicator

Version 1.3.1

pestr

Interface to Download Data on Pests and Hosts from 'EPPO'

Version 0.8.2

photosynthesis

Tools for Plant Ecophysiology & Modeling

Version 2.1.5

plantecophys

Modelling and Analysis of Leaf Gas Exchange Data

Version 1.4-6

pleiotest

Fast Sequential Pleiotropy Test

Version 1.0.0

pliman

Tools for Plant Image Analysis

Version 3.0.0

PROSPER

Simulation of Weed Population Dynamics

Version 0.3.3

polyqtlR

QTL Analysis in Autopolyploid Bi-Parental F1 Populations

Version 0.1.1

sommer

Solving Mixed Model Equations in R

Version 4.3.6

soiltexture

Functions for Soil Texture Plot, Classification and Transformation

Version 1.5.3

satellite

Handling and Manipulating Remote Sensing Data

Version 1.0.5

rapsimng

APSIM Next Generation

Version 0.4.4

statgenIBD

Calculation of IBD Probabilities

Version 1.0.7

qtl

Tools for Analyzing QTL Experiments

Version 1.70

qrlabelr

Generate Machine- And Human-Readable Plot Labels for Experiments

Version 0.2.0

rrBLUP

Ridge Regression and Other Kernels for Genomic Selection

Version 4.6.3

resevol

Simulate Agricultural Production and Evolution of Pesticide Resistance

Version 0.3.4.0

rPAex

Automatic Detection of Experimental Unit in Precision Agriculture

Version 1.0.5

tidyUSDA

A Minimal Tool Set for Gathering USDA Quick Stat Data for Analysis and...

Version 0.4.1

SoilR

Models of Soil Organic Matter Decomposition

Version 1.2.107

selection.index

Analysis of Selection Index in Plant Breeding

Version 1.2.0

qgg

Statistical Tools for Quantitative Genetic Analyses

Version 1.1.6

QTLRel

Tools for Mapping of Quantitative Traits of Genetically Related Indivi...

Version 1.14

statgenGxE

Genotype by Environment (GxE) Analysis

Version 1.0.9

toolStability

Tool for Stability Indices Calculation

Version 0.1.2

Recocrop

Estimating Environmental Suitability for Plants

Version 0.4-1

stlELM

Hybrid Forecasting Model Based on STL Decomposition and ELM

Version 0.1.1

vmdTDNN

VMD Based Time Delay Neural Network Model

Version 0.1.1

tealeaves

Solve for Leaf Temperature Using Energy Balance

Version 1.0.6

TSDFGS

Training Set Determination for Genomic Selection

Version 2.0

SoilTesting

Organic Carbon and Plant Available Nutrient Contents in Soil

Version 0.1.0

spFW

Hierarchical Spatial Finlay-Wilkinson Model

Version 0.1.0

QI

Quantity-Intensity Relationship of Soil Potassium

Version 0.1.0

usdampr

Request USDA MPR Historical Data via the 'LMR' API

Version 1.0.1

SoyNAM

Soybean Nested Association Mapping Dataset

Version 1.6.2

Rwofost

WOFOST Crop Growth Simulation Model

Version 0.8-3

weaana

Analysis the Weather Data

Version 0.1.1

simplePHENOTYPES

Simulation of Pleiotropic, Linked and Epistatic Phenotypes

Version 1.3.0

variability

Genetic Variability Analysis for Plant Breeding Research

Version 0.1.0

spsh

Estimation and Prediction of Parameters of Various Soil Hydraulic Prop...

Version 1.1.0

WCM

Water Cloud Model (WCM) for the Simulation of Leaf Area Index (LAI) an...

Version 0.2.2

rarms

Access Data from the USDA ARMS Data API

Version 1.0.0

STGS

Genomic Selection using Single Trait

Version 0.1.0

ZeBook

Working with Dynamic Models for Agriculture and Environment

Version 1.1

soilwater

Implementation of Parametric Formulas for Soil Water Retention or Cond...

Version 1.0.5

agriutilities

Utilities for Data Analysis in Agriculture

Version 1.2.0

AGHmatrix

Relationship Matrices for Diploid and Autopolyploid Species

Version 2.1.4

cropgrowdays

Crop Growing Degree Days and Agrometeorological Calculations

Version 0.2.1

gpbStat

Comprehensive Statistical Analysis of Plant Breeding Experiments

Version 0.4.4

PopVar

Genomic Breeding Tools: Genetic Variance Prediction and Cross-Validati...

Version 1.3.2

CropScapeR

Access Cropland Data Layer Data via the 'CropScape' Web Service

Version 1.1.5

geneticae

Statistical Tools for the Analysis of Multi Environment Agronomic Tria...

Version 0.4.0

ascotraceR

Simulate the Spread of Ascochyta Blight in Chickpea

Version 0.0.1

lue

Light Use Efficiency Model to Estimate Biomass and YIELD with and With...

Version 0.2.1

SIMplyBee

'AlphaSimR' Extension for Simulating Honeybee Populations and Breeding...

Version 0.4.1

qtlpoly

Random-Effect Multiple QTL Mapping in Autopolyploids

Version 0.2.4

QBMS

Query the Breeding Management System(s)

Version 1.5.0

mappoly

Genetic Linkage Maps in Autopolyploids

Version 0.4.1

SoilTaxonomy

A System of Soil Classification for Making and Interpreting Soil Surve...

Version 0.2.4

nlraa

Nonlinear Regression for Agricultural Applications

Version 1.9.7

PGRdup

Discover Probable Duplicates in Plant Genetic Resources Collections

Version 0.2.3.9

spectralR

Obtain and Visualize Spectral Reflectance Data for Earth Surface Polyg...

Version 0.1.3

plantTracker

Extract Demographic and Competition Data from Fine-Scale Maps

Version 1.1.0

mpspline2

Mass-Preserving Spline Functions for Soil Data

Version 0.1.6

poppr

Genetic Analysis of Populations with Mixed Reproduction

Version 2.9.6

soilDB

Soil Database Interface

Version 2.8.5

geodata

Download Geographic Data

Version 0.6-2

AquaBEHER

Estimation and Prediction of Wet Season Calendar and Soil Water Balanc...

Version 1.4.0

biometryassist

Functions to Assist Design and Analysis of Agronomic Experiments

Version 1.2.1

polymapR

Linkage Analysis in Outcrossing Polyploids

Version 1.1.6

sharpshootR

A Soil Survey Toolkit

Version 2.3.2

gosset

Tools for Data Analysis in Experimental Agriculture

Version 1.4

FAOSTAT

Download Data from the FAOSTAT Database

Version 2.4.0

hagis

Analysis of Plant Pathogen Pathotype Complexities, Distributions and D...

Version 3.1.12

bravo

Bayesian Screening and Variable Selection

Version 3.2.2

apsimx

Inspect, Read, Edit and Run 'APSIM' "Next Generation" and 'APSIM' Clas...

Version 2.8.0

stability

Stability Analysis of Genotype by Environment Interaction (GEI)

Version 0.6.0

metrica

Prediction Performance Metrics

Version 2.1.0

soiltestcorr

Soil Test Correlation and Calibration

Version 2.2.1

BGLR

Bayesian Generalized Linear Regression

Version 1.1.3

sorcering

Soil Organic Carbon and CN Ratio Driven Nitrogen Modelling Framework

Version 1.1.0

statgenSTA

Single Trial Analysis (STA) of Field Trials

Version 1.0.14

statgenHTP

High Throughput Phenotyping (HTP) Data Analysis

Version 1.0.7

LWFBrook90R

Simulate Evapotranspiration and Soil Moisture with the SVAT Model LWF-...

Version 0.6.1

SpATS

Spatial Analysis of Field Trials with Splines

Version 1.0-19

AlphaSimR

Breeding Program Simulations

Version 1.6.1

aqp

Algorithms for Quantitative Pedology

Version 2.1.0

coxme

Mixed Effects Cox Models

Version 2.2-22

Rquefts

Quantitative Evaluation of the Native Fertility of Tropical Soils

Version 1.2-4

asremlPlus

Augments 'ASReml-R' in Fitting Mixed Models and Packages Generally in ...

Version 4.4.43

statgenMPP

QTL Mapping for Multi Parent Populations

Version 1.0.3

rnassqs

Access Data from the NASS 'Quick Stats' API

Version 0.6.3

inti

Tools and Statistical Procedures in Plant Science

Version 0.6.6

FedData

Download Geospatial Data Available from Several Federated Data Sources

Version 4.2.0

OBIC

Calculate the Open Bodem Index (OBI) Score

Version 3.0.3

statgenGWAS

Genome Wide Association Studies

Version 1.0.10

metan

Multi Environment Trials Analysis

Version 1.19.0